Locus 7277

Sequence ID 3L_DroMel_CAF1
Location 19,482,539 – 19,482,659
Length 120
Max. P 0.634423
window11828

overview

Window 8

Location 19,482,539 – 19,482,659
Length 120
Sequences 4
Columns 120
Reading direction reverse
Mean pairwise identity 88.28
Mean single sequence MFE -34.08
Consensus MFE -27.37
Energy contribution -28.00
Covariance contribution 0.62
Combinations/Pair 1.19
Mean z-score -1.53
Structure conservation index 0.80
SVM decision value 0.21
SVM RNA-class probability 0.634423
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 19482539 120 - 23771897
CUUAGUGUCUUGCAGCCUUUUUGUAUUCUAGCUCACAUAAGGAGGUUCGGAAGAUCUUACGCACAUCUUUUCUAAGGACUUUGAAGGCUUCGGCUUGUUCAGAAAAGUCCUUCCAAAAGU
..(((.(((((.((((((((((((............))))))))))).).))))).))).......(((((..(((((((((..((((....)))).......)))))))))..))))). ( -33.30)
>DroSec_CAF1 122819 119 - 1
CUUGGUGUCUUGCAGUCUU-UUGUAUUCCUGCUCACUUAAGGAGGUUCGGAAGACCUUAGGCACAUCUUUUGUAAGGACUUUGAAGGUUUCGGCUUGUUCGGAAAAGUCCUUCCAAAAGU
....((((((....(((((-(((..(((((.........)))))...))))))))...))))))..((((((.(((((((((..((((....)))).......))))))))).)))))). ( -39.80)
>DroSim_CAF1 122979 119 - 1
CUUGGUGUCUUGCAGUCUU-UUGUAUUCCUGCUCACUUAAGGAGGUUCGGAAGGCCUUAGGCACAUCUUUUGUUAGGACUUUGAAGGUUUCGGCUUGUUCGGAAAAGUCCUUCCAAAAGU
....((((((....(((((-(((..(((((.........)))))...))))))))...))))))..((((((..((((((((..((((....)))).......))))))))..)))))). ( -39.40)
>DroEre_CAF1 108205 119 - 1
CUUGGUGUCCUGCAGUCGU-UUGUAUCCCUGAUCACACAAGGUUGUCCGGAAGAUCUUACGCAUAUCUUUUGUAAGGACUUUGAAGGUUUCGGCCUGUUCGCAAAAGUCACUCCAAAAGC
...((((.(.(((....((-.((.(((...))))).)).((((((.((.((((.(((((((.........))))))).))))...))...))))))....)))...).))))........ ( -23.80)
>consensus
CUUGGUGUCUUGCAGUCUU_UUGUAUUCCUGCUCACAUAAGGAGGUUCGGAAGACCUUACGCACAUCUUUUGUAAGGACUUUGAAGGUUUCGGCUUGUUCGGAAAAGUCCUUCCAAAAGU
(((((((....((((.............)))).))).))))(((((.(....))))))........((((((.(((((((((..((((....)))).......))))))))).)))))). (-27.37 = -28.00 +   0.62)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:42:53 2006