Locus 7276

Sequence ID 3L_DroMel_CAF1
Location 19,479,488 – 19,479,580
Length 92
Max. P 0.956641
window11827

overview

Window 7

Location 19,479,488 – 19,479,580
Length 92
Sequences 6
Columns 93
Reading direction forward
Mean pairwise identity 75.64
Mean single sequence MFE -14.82
Consensus MFE -10.78
Energy contribution -10.73
Covariance contribution -0.05
Combinations/Pair 1.17
Mean z-score -1.67
Structure conservation index 0.73
SVM decision value 1.47
SVM RNA-class probability 0.956641
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 19479488 92 + 23771897
GUUGCGCCUUUUUGUAUGCAGCAUAAAAUUAAAUUAUUUGUUGCAUAAGCCUCGCUUCCCCGCCCUUCCCCCCCCUCUCCCCACGCCCUU-UU
...(((........(((((((((...............)))))))))......((......))....................)))....-.. ( -13.26)
>DroVir_CAF1 70863 72 + 1
GUUC-UCCUUUUUGUAUGCAGCAUAAAAUUAAAUUAUUUGUUGCAUAAGCUGGGCA-----ACCAU-------------CUCAGCGCCCG-A-
....-.........(((((((((...............))))))))).((((((..-----.....-------------)))))).....-.- ( -17.56)
>DroSec_CAF1 119341 78 + 1
GUUGCGCCUUUUUGUAUGCAGCAUAAAAUUAAAUUAUUUGUUGCAUAAGCCUCGCUUCCCCACCCG-------------CCCACGCCCUU-U-
...(((........(((((((((...............))))))))).....)))...........-------------...........-.- ( -12.48)
>DroSim_CAF1 119455 78 + 1
GUUGCGGCUUUUUGUAUGCAGCAUAAAAUUAAAUUAUUUGUUGCAUAAGCCUCGCUUCCCCGCCCU-------------CCCACGCCCUU-U-
...((((((.....(((((((((...............)))))))))))))..((......))...-------------.....))....-.- ( -16.76)
>DroYak_CAF1 158157 73 + 1
GUUGCGCCUUUUUGUAUGCAGCAUAAAAUUAAAUUAUUUGUUGCAUAAGCCUCGCUCCCCGCCCCUU------------------UCCAC-U-
...(((........(((((((((...............))))))))).....)))............------------------.....-.- ( -12.48)
>DroAna_CAF1 104916 71 + 1
GUUGCGCCUUUUUGUAUGCAGCAUAAAAUUAAAUUAUUUGUUGCAUAAGCCCCGUC--------CG-------------GCCACCAGCUGCU-
((.((.........(((((((((...............))))))))).(((.....--------.)-------------)).....)).)).- ( -16.36)
>consensus
GUUGCGCCUUUUUGUAUGCAGCAUAAAAUUAAAUUAUUUGUUGCAUAAGCCUCGCUUCCCCACCCU_____________CCCACGCCCUU_U_
...(((........(((((((((...............))))))))).....)))...................................... (-10.78 = -10.73 +  -0.05)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:42:52 2006