Locus 7275

Sequence ID 3L_DroMel_CAF1
Location 19,479,210 – 19,479,308
Length 98
Max. P 0.578987
window11826

overview

Window 6

Location 19,479,210 – 19,479,308
Length 98
Sequences 6
Columns 108
Reading direction reverse
Mean pairwise identity 80.96
Mean single sequence MFE -29.53
Consensus MFE -18.81
Energy contribution -20.33
Covariance contribution 1.53
Combinations/Pair 1.05
Mean z-score -1.57
Structure conservation index 0.64
SVM decision value 0.09
SVM RNA-class probability 0.578987
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 19479210 98 - 23771897
CGUUCUGAAAUAUGGCGCAUACGCCCCGUGGGACGAAAGGACG--------AAAGGCUCGCAAAACGGCAACGAGGUCAGCCCAUA-AACUGGCCUAAAUGUCA-CAU
(((((((......((((....))))..(((((.(....)..(.--------...).)))))....))).))))(((((((......-..)))))))........-... ( -29.80)
>DroVir_CAF1 70579 90 - 1
CAAACUGAAAUAUUGCGCAUACGCCGCCUGGGACAGCGGAAA--------------AUCGC----UGGCAAUGAGGUCGAGCCGUAAAACUGGGCUAAAUGUCGGCAU
....((((......((.((((((((((((.(..(((((....--------------..)))----))....).))).)).).))))....)).))......))))... ( -24.90)
>DroSim_CAF1 119177 98 - 1
CGUUCUGAAAUAUGGCGCAUACGCCCCGUGGGACGAAAGGACG--------AAAGGCUCGCAAAACGGCAACGAGGUCAGCCCAUA-AACUGGCCUAAAUGUCA-CAU
(((((((......((((....))))..(((((.(....)..(.--------...).)))))....))).))))(((((((......-..)))))))........-... ( -29.80)
>DroEre_CAF1 104610 98 - 1
CGUUCUGAAAUAUGGCGCAUUCGCCCCGUGGGACGAAAGGACG--------AUGGGUUCGCAAAACGGCAACGAGGUCAGCCCAUA-AACUGGCCUAAAUGUCA-CAU
.(((.((......((((....))))((((.(..(....)..).--------)))).....)).)))((((...(((((((......-..)))))))...)))).-... ( -32.80)
>DroYak_CAF1 157871 106 - 1
CGUUCUGAAUUAUGGCGCAUACGCCCCGUGGGACGAAAGGACGAAUGGACGAAAGGCUCGCAAAACGGCAACGAGGUCAGCCCAUA-AACUGGCCUAAAUGUCA-CAU
.(((.((......((((....))))((((.(..(....)..)..)))).(....).....)).)))((((...(((((((......-..)))))))...)))).-... ( -31.60)
>DroAna_CAF1 104623 90 - 1
CAAACUGAAAUAUGGCGCAUACGCCCCGUGGGACGA----------------AAGGCUAGCAAAACGGCAUUGAGGUCAGGCCAUA-AACUGGCCUAAAUGUCA-UAU
.............((((....))))..((.((.(..----------------..).)).)).....((((((.(((((((......-..))))))).)))))).-... ( -28.30)
>consensus
CGUUCUGAAAUAUGGCGCAUACGCCCCGUGGGACGAAAGGACG________AAAGGCUCGCAAAACGGCAACGAGGUCAGCCCAUA_AACUGGCCUAAAUGUCA_CAU
(((((((......((((....))))...)))))))...............................((((...(((((((.........)))))))...))))..... (-18.81 = -20.33 +   1.53)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:42:51 2006