| Sequence ID | 3L_DroMel_CAF1 |
|---|---|
| Location | 19,477,430 – 19,477,535 |
| Length | 105 |
| Max. P | 0.540251 |
| Location | 19,477,430 – 19,477,535 |
|---|---|
| Length | 105 |
| Sequences | 6 |
| Columns | 108 |
| Reading direction | reverse |
| Mean pairwise identity | 76.44 |
| Mean single sequence MFE | -24.30 |
| Consensus MFE | -14.24 |
| Energy contribution | -14.05 |
| Covariance contribution | -0.19 |
| Combinations/Pair | 1.26 |
| Mean z-score | -1.43 |
| Structure conservation index | 0.59 |
| SVM decision value | 0.01 |
| SVM RNA-class probability | 0.540251 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 19477430 105 - 23771897 CUUGAUGGCCAUUAAAAAUGGUUUAAUUAUAGGCCGAACAGAUGUUGGCCG-AAGACAAAGGCAAACUUUUGCUAAUGGGAAAACGCUAAUCGGGGAGCCUGGAG--C ((((((((((((.....)))((((..((((.((((.(((....))))))).-.((.((((((....)))))))).))))..))))))).))))))..........--. ( -24.00) >DroPse_CAF1 77025 105 - 1 CUUGAUGGCCAUUAAAAAUGCUUUAAUUAUGGCCCAAACAGAUGUUGGCCA-AAGACAAAAGAAAACUUUUGCUAAUGGGAAAACGUUCAGUGGAAUGCGGACCU--C ......((((.........(((........)))(((....((((((..((.-.((.((((((....))))))))....))..))))))...))).....)).)).--. ( -22.40) >DroSim_CAF1 117384 105 - 1 CUUGAUGGCCAUUAAAAAUGGUUUAAUUAUAGGCCUAACAGAUGUUGGCCG-AAGACAAAGGAAAACUUUUGCUAAUGGGAAAACGCUAAUCGGGGAGCAUGGAG--C ((((((((((((.....)))((((..((((.((((.(((....))))))).-.((.((((((....)))))))).))))..))))))).))))))..........--. ( -24.00) >DroEre_CAF1 102768 102 - 1 CUUGAUGGCCAUUAAAAAUGGUUUAAUUAUAGGCCGAACAGAUGUUGGUCG-AAGACAGAAGAAAACUUUUGCUAAUGGGAAAGCGUUAGCCUGG--GCAUGGAG--- (((.(((.(((.......(((((((....)))))))....((((((..((.-(((.((((((....))))))))..).))..))))))....)))--.))).)))--- ( -25.10) >DroYak_CAF1 155953 82 - 1 CUCGAUGGCCAUUAAAAAUGGUUUAAUUAUAGGCCGAACAGAUGUUGUUCG-AAGACGGAAGAAAACUUUUGCUAAUGGGAA----------------------U--- ((((..((((((((((.....))))))....))))((((((...)))))).-.((.((((((....))))))))..))))..----------------------.--- ( -17.00) >DroAna_CAF1 102892 97 - 1 GUAGAAGGCCAUUAAAAAUGCUUUAAUUGUAGGCCAAGCAGAUGUUGGUCAAAAGACAAAGGAAAACUU-UCCUAAUGGCCAACUCC----------GCAAGGAGUUC ......((((((((............((((.((((((.(....))))))).....)))).((((....)-)))))))))))((((((----------....)))))). ( -33.30) >consensus CUUGAUGGCCAUUAAAAAUGGUUUAAUUAUAGGCCGAACAGAUGUUGGCCG_AAGACAAAAGAAAACUUUUGCUAAUGGGAAAACGCUAA_CGGG__GCAUGGAG__C ........((((((.................((((.(((....)))))))......((((((....)))))).))))))............................. (-14.24 = -14.05 + -0.19)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:42:50 2006