Locus 7272

Sequence ID 3L_DroMel_CAF1
Location 19,473,448 – 19,473,562
Length 114
Max. P 0.717328
window11821

overview

Window 1

Location 19,473,448 – 19,473,562
Length 114
Sequences 5
Columns 114
Reading direction reverse
Mean pairwise identity 80.66
Mean single sequence MFE -18.18
Consensus MFE -13.22
Energy contribution -13.26
Covariance contribution 0.04
Combinations/Pair 1.06
Mean z-score -1.67
Structure conservation index 0.73
SVM decision value 0.39
SVM RNA-class probability 0.717328
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 19473448 114 - 23771897
AUUAGCAAAUAGGCUUAGGAGAGCUAUUCAACAAUCUGAAUAUAAAUUCCACAUGCAGCACACACGUGUCGAAAACAAAAAAAAAAAAACAGAAAGAAUUAGUUUGCUUACGAA
...(((((((..((...((((...((((((......))))))....))))....)).((((....))))................................)))))))...... ( -17.30)
>DroSec_CAF1 113480 91 - 1
AUUAGCAAAUAGGCUUAGGAGAGCUAUUCAACAAUCUGAAUAUAAAUUCCAAAUGCAGCACACACGUGCCGAAAA---------AAAAACAGAA--------------UAGGAA
....(((....(((((....)))))(((((......)))))............))).((((....))))......---------..........--------------...... ( -14.30)
>DroSim_CAF1 113599 90 - 1
AUUAGCAAAUAGGCUUAGGAGAGCUAUUCAACAAUCUGAAUAUAAAUUCCAAAUGCAGCACACACGUGCCGAAAA----------AAAACAGAA--------------UAGGAA
....(((....(((((....)))))(((((......)))))............))).((((....))))......----------.........--------------...... ( -14.30)
>DroEre_CAF1 98981 100 - 1
AUUAGCAAAUAGGCUUAGGAGAGCUAUUCAACAAUCUGAAUAUAAAUGCCACAUGCAGCACACACGUGCCACCAA--------------CAGAAUGAAUUAGUUAGCCUACGAG
...(((......)))((((..(((((((((....((((........(((.....)))((((....))))......--------------)))).)))).)))))..)))).... ( -22.50)
>DroYak_CAF1 151966 100 - 1
AUUAGCAAAUAGGCUUAGGAGAGCUAUUCAACAAUCUGAAUAUAAAUUCCACAGGCAGCACACACGUGCCACCAA--------------CAGGAAGAAUUAGUUAGCCUACGAA
.........((((((..((((...((((((......))))))....))))...((..((((....))))..))..--------------...............)))))).... ( -22.50)
>consensus
AUUAGCAAAUAGGCUUAGGAGAGCUAUUCAACAAUCUGAAUAUAAAUUCCACAUGCAGCACACACGUGCCGAAAA__________AAAACAGAA_GAAUUAGUU_GC_UACGAA
....(((....(((((....)))))(((((......)))))............))).((((....))))............................................. (-13.22 = -13.26 +   0.04)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:42:46 2006