Locus 7271

Sequence ID 3L_DroMel_CAF1
Location 19,468,572 – 19,468,665
Length 93
Max. P 0.522620
window11820

overview

Window 0

Location 19,468,572 – 19,468,665
Length 93
Sequences 6
Columns 94
Reading direction reverse
Mean pairwise identity 80.63
Mean single sequence MFE -29.00
Consensus MFE -15.03
Energy contribution -15.70
Covariance contribution 0.67
Combinations/Pair 1.24
Mean z-score -2.09
Structure conservation index 0.52
SVM decision value -0.02
SVM RNA-class probability 0.522620
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 19468572 93 - 23771897
AUUCGCACCCCAGUGGACACUUAUCCCAAGGAUCCCUACUUAAACGACGGCUUCAAGCCAACGGGCUGGGGACAUGUGACUAACGUGAGUG-AA
.(((((.((((((((((..(((.....)))..))).........((..(((.....)))..)).))))))).(((((.....))))).)))-)) ( -33.70)
>DroPse_CAF1 67738 94 - 1
AUUCGCACCCCAGUGGAUACGUACCCCAACGAUCCCUAUUUGAGAGAUGGCUUCAAGCCAACGGGCUGGGGACAUGUCACCAAUGUGAGUAGAA
((((((((((((((((((.(((......)))))))..........(.((((.....)))).)..)))))))...((....)).))))))).... ( -30.20)
>DroWil_CAF1 135964 93 - 1
AUACGAACACCAGUGGACACAUAUCCAAAUGAUCCUUAUAUAAAAAAUGGUUUCCAACCCACAGGUUGGGGGCACGUGACCAAUGUGAGUU-CA
....((((.(((.(((.(((..(((.....)))................((..((((((....))))))..))..))).))).)).).)))-). ( -26.70)
>DroMoj_CAF1 12647 93 - 1
AUACGCACACCUGUUGACACCUAUCCCAACGAUCCCUACAUCAAGGACAGCUUCAAGCCCACCGGCUGGGGGCAUGUGACCAAUGUGAGUU-GU
..((.(((((((((((..........))))(((......))).)))((((((((.((((....)))).))))).)))......)))).)).-.. ( -22.90)
>DroAna_CAF1 96674 93 - 1
AUUCGCACGCCAGUGGAUACAUAUCCAAAAGAUCCUUACUUAAAGGAUGGAUUUAAGCCCACAGGCUGGGGGCAUGUGACCAAUGUGAGUG-AA
.(((((.(((...(((.(((((..((.....((((((.....)))))).......((((....))))..))..))))).)))..))).)))-)) ( -30.30)
>DroPer_CAF1 68196 94 - 1
AUUCGCACCCCAGUGGAUACGUACCCCAACGAUCCCUAUUUGAGAGAUGGCUUCAAGCCAACGGGCUGGGGACAUGUCACCAAUGUGAGUAGAA
((((((((((((((((((.(((......)))))))..........(.((((.....)))).)..)))))))...((....)).))))))).... ( -30.20)
>consensus
AUUCGCACCCCAGUGGACACAUAUCCCAACGAUCCCUACUUAAAAGAUGGCUUCAAGCCAACGGGCUGGGGACAUGUGACCAAUGUGAGUA_AA
(((((((......(((.(((...((((...((..((............))..)).((((....))))))))....))).))).))))))).... (-15.03 = -15.70 +   0.67)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:42:45 2006