Sequence ID | 3L_DroMel_CAF1 |
---|---|
Location | 19,459,903 – 19,459,998 |
Length | 95 |
Max. P | 0.663012 |
Location | 19,459,903 – 19,459,998 |
---|---|
Length | 95 |
Sequences | 6 |
Columns | 98 |
Reading direction | reverse |
Mean pairwise identity | 79.39 |
Mean single sequence MFE | -14.12 |
Consensus MFE | -12.42 |
Energy contribution | -12.58 |
Covariance contribution | 0.17 |
Combinations/Pair | 1.00 |
Mean z-score | -1.14 |
Structure conservation index | 0.88 |
SVM decision value | 0.27 |
SVM RNA-class probability | 0.663012 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 19459903 95 - 23771897 UCCGCAUCCCCAUACCCAUUCCCGUAUCCCGCACCCGAAUCCCCUUACCCGGCAAAGCAUUUAAAUAAAUUGAAAUGCAAAUGUUUUUCCGGAAG--- ...((......((((........))))...))................((((.(((((((((..((........))..))))))))).))))...--- ( -14.20) >DroPse_CAF1 60091 85 - 1 GCCCCAGCCCCAA-------------CCUAGAACUGAGAGCCACCCAACCAGCAAAGCAUUUAAAUAAAUUGAAAUGCAAAUGUUUUCCAGGAAUGUU .............-------------(((.((((((.............)))....((((((..........)))))).......))).)))...... ( -9.02) >DroSec_CAF1 101345 82 - 1 UCCGCAUCCCCAU-------------UCUCGCACCCGAAUCCCAUUCCCCGGCAAAGCAUUUAAAUAAAUUGAAAUGCAAAUGUUUUUCCGGAAG--- .............-------------..(((....)))..........((((.(((((((((..((........))..))))))))).))))...--- ( -13.80) >DroSim_CAF1 102082 82 - 1 UCCGCAUCCCCAU-------------UCUCGCACCCGAAUCCCAUUCCCCGGCAAAGCAUUUAAAUAAAUUGAAAUGCAAAUGUUUUUCCGGAAG--- .............-------------..(((....)))..........((((.(((((((((..((........))..))))))))).))))...--- ( -13.80) >DroEre_CAF1 88230 82 - 1 UUCGCAUCACCAU-------------ACCCGCACCCGGAUCCCAUUCUCCGGCAAAGCAUUUAAAUAAAUUGAAAUGCAAAUGUUUUUCCGGAAG--- .............-------------..(((....))).........(((((.(((((((((..((........))..))))))))).)))))..--- ( -17.10) >DroYak_CAF1 140891 77 - 1 ----CAUCCCCGU-------------UCCCGUUCCCG-UUCCCAUUCCCCGGCAAAGCAUUUAAAUAAAUUGAAAUGCAAAUGUUUUUCCGGGAG--- ----.........-------------...........-.........(((((.(((((((((..((........))..))))))))).)))))..--- ( -16.80) >consensus UCCGCAUCCCCAU_____________UCCCGCACCCGAAUCCCAUUCCCCGGCAAAGCAUUUAAAUAAAUUGAAAUGCAAAUGUUUUUCCGGAAG___ ................................................((((.(((((((((..((........))..))))))))).))))...... (-12.42 = -12.58 + 0.17)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:42:44 2006