Locus 727

Sequence ID 3L_DroMel_CAF1
Location 2,204,899 – 2,205,008
Length 109
Max. P 0.831565
window1115

overview

Window 5

Location 2,204,899 – 2,205,008
Length 109
Sequences 5
Columns 109
Reading direction forward
Mean pairwise identity 87.94
Mean single sequence MFE -24.62
Consensus MFE -24.36
Energy contribution -23.84
Covariance contribution -0.52
Combinations/Pair 1.17
Mean z-score -1.37
Structure conservation index 0.99
SVM decision value 0.72
SVM RNA-class probability 0.831565
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 2204899 109 + 23771897
UCUUUUUUCUUUUUUUUUUUGUUCGGCGUUUUCCCAUUUUCCAUUUUCCAGCCAAGCGGAAGUGUCUGAAUGAUGGAUGCUGAUUUCGCUCAGUGCCCAAAAGUGCCAC
........................((((((((..(((((..((((((((......).)))))))...))))).(((..(((((......)))))..))))))))))).. ( -24.10)
>DroSec_CAF1 256851 98 + 1
UCCUU-----------UUUUGUUCGGCGUUUUCCCAUUUUCCAUUUUCCAGCCAAGCGGAAGUGUCUGAAUGAUGGAUGCUGAUUUCGCUCAGUGCCCCAAAGUGCCAC
.....-----------........((((((((.......((((((...(((....((....))..)))...)))))).(((((......))))).....)))))))).. ( -23.10)
>DroSim_CAF1 257351 98 + 1
UCCUU-----------UUUUGUUCGGCGUUUUCCCAUUUUCCAUUUUCCAGCCAAGCGGAAGUGUCUGAAUGAUGGAUGCUGAUUUCGCUCAGUGCCCAAAAGUGCCAC
.....-----------........((((((((..(((((..((((((((......).)))))))...))))).(((..(((((......)))))..))))))))))).. ( -24.10)
>DroEre_CAF1 263771 105 + 1
UUUUU---CCUUUUUUUGUUGCCCGGCGUU-UCCCAUUUUCCAUUUUCCAGCCAAGCGGAAGUGUCUGAAUGAUGGAUGCUGAUUUCGCUCAGUGCCCAAAAAUGCCAC
.....---................((((((-(..(((((..((((((((......).)))))))...))))).(((..(((((......)))))..))).))))))).. ( -26.20)
>DroYak_CAF1 256582 108 + 1
UAUUUUU-UUUUUAUUUUUUCCCCGGUGUUUUCCCAUUUUCCAUUUUCCAGCCAAGCGGAAGUGUCUGAAUAAUGGAUGCUGAUUUCGCUCAGUGCCCAAAAACGCCAC
.......-................((((((((.......((((((...(((....((....))..)))...)))))).(((((......))))).....)))))))).. ( -25.60)
>consensus
UCUUU_____UUU_UUUUUUGUUCGGCGUUUUCCCAUUUUCCAUUUUCCAGCCAAGCGGAAGUGUCUGAAUGAUGGAUGCUGAUUUCGCUCAGUGCCCAAAAGUGCCAC
........................((((((((.......((((((...(((....((....))..)))...)))))).(((((......))))).....)))))))).. (-24.36 = -23.84 +  -0.52)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:49:35 2006