Locus 7268

Sequence ID 3L_DroMel_CAF1
Location 19,456,891 – 19,456,991
Length 100
Max. P 0.900035
window11816

overview

Window 6

Location 19,456,891 – 19,456,991
Length 100
Sequences 5
Columns 108
Reading direction reverse
Mean pairwise identity 79.37
Mean single sequence MFE -19.05
Consensus MFE -14.84
Energy contribution -15.78
Covariance contribution 0.94
Combinations/Pair 1.05
Mean z-score -1.82
Structure conservation index 0.78
SVM decision value 1.01
SVM RNA-class probability 0.900035
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 19456891 100 - 23771897
UUUCUGUUUCAGUUCCUGCUGCCAUCUCCACAGCUCCACAUUUCCACAGCCCUACAGCUUC--------ACAUUUCCCCGCUGCCCGCUCAUUUUUGCUGGGAGGUGA
.........((((....)))).(((((((.((((.............(((....((((...--------..........))))...))).......))))))))))). ( -22.47)
>DroSec_CAF1 98410 100 - 1
UUUCUGUUUCAGUUCCUGCUGCCAUCUUCACAGCUCCACUUUUCCACAGCCCUACAGCUCC--------ACAUUUCCCCGCUGCCCGCUCAUUUUUGCUGGGAGGUGA
.........((((....)))).(((((((.((((.............(((....((((...--------..........))))...))).......))))))))))). ( -19.57)
>DroSim_CAF1 99070 76 - 1
UUUCUGUUUCAGUUCCUGCUGCCAUCUCCACAGCUCC--------------------------------ACAUUUCCCCGCUACCCGCUCAUUUUUGCUGGGAGGUGA
.........((((....)))).(((((((.((((...--------------------------------...........................))))))))))). ( -18.01)
>DroEre_CAF1 85549 76 - 1
UUUCUGUUUCAGUUCCUGCUGCCAUCUCCACAGCUCC--------------------------------ACAUUUCCCCGCUGCCCGCUCAUUUUUGCCGGGAGGUGA
.........((((....)))).(((((((.((((...--------------------------------..........)))).(.((........)).)))))))). ( -17.82)
>DroYak_CAF1 138060 108 - 1
UUUCUGUUUCAGUUCCUGCUGCCAUCUCCACAUCUCCCCAUUUCCACAGCUCCACAGCUCCACAUUUCGACAUUUCCCCGCUGCCCGCUCAUUUUUGCCAGGAGGUGA
.........((((....)))).(((((((.........................((((.....................))))...((........))..))))))). ( -17.40)
>consensus
UUUCUGUUUCAGUUCCUGCUGCCAUCUCCACAGCUCC_C_UUUCCACAGC_C_ACAGCU_C________ACAUUUCCCCGCUGCCCGCUCAUUUUUGCUGGGAGGUGA
.........((((....)))).(((((((.((((.............(((......)))....................((.....))........))))))))))). (-14.84 = -15.78 +   0.94)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:42:39 2006