Locus 7267

Sequence ID 3L_DroMel_CAF1
Location 19,455,284 – 19,455,375
Length 91
Max. P 0.873090
window11815

overview

Window 5

Location 19,455,284 – 19,455,375
Length 91
Sequences 6
Columns 110
Reading direction forward
Mean pairwise identity 79.34
Mean single sequence MFE -25.20
Consensus MFE -17.04
Energy contribution -17.27
Covariance contribution 0.22
Combinations/Pair 1.13
Mean z-score -1.85
Structure conservation index 0.68
SVM decision value 0.88
SVM RNA-class probability 0.873090
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 19455284 91 + 23771897
AGCGCCGGCAUCCUGCCACUUUGUUUGCCGGC-AAACAUUUGUGCAGCUUAUUAAUAUGCAUGCCACCCGGCUCUUCUC------------------CCCCGGCUCCUCA
...(((((....((((.((..((((((....)-)))))...))))))...............(((....))).......------------------..)))))...... ( -26.00)
>DroSec_CAF1 96812 90 + 1
AGCGCCGGCAUCCUGCCACUUUGUUUGCCGGC-AAACAUUUGUGCAGCUUAUUAAUAUGCAUGCCACCCGGCUCUUCUC------------------C-CCGGCACCUCA
...(((((....((((.((..((((((....)-)))))...))))))...............(((....))).......------------------.-)))))...... ( -26.50)
>DroSim_CAF1 97474 92 + 1
AGCGCCGGCAUCCUGCCACUUUGUUUGCCAUCUAGAGAUUUGUGCAGCUUAUUAAUAUGCAUGCCACCCGGCUCUUCUC------------------CCCCGGCUCCUCA
...(((((((..(.........)..)))).....((((...(((((...........)))))(((....)))...))))------------------....)))...... ( -23.50)
>DroEre_CAF1 84004 109 + 1
AGCGCCGGCAUCCUGCCACUUUGUUUGCCGGC-AAACAUUUGUGCAGCUUAUUAAUAUGCAUGCCACCCGACUCUGCUCCCCCGGCUCCCCCGACUGUCCCGGCUCCUCA
((((((((((..(.........)..)))))))-.......((.(((((..........)).))))).........)))...((((..(........)..))))....... ( -27.10)
>DroYak_CAF1 136493 99 + 1
AGCGCCGGCAUCCUGCCACUUUGUUUGCUGGC-AAACAUUUGUGCAGCUUAUUAAUAUGCAUGCCACCCGAC------CACCCGGC----CCUGCUCCCCCGGCUCCUCA
...(((((....((((.((..((((((....)-)))))...))))))...........(((.(((.......------.....)))----..)))....)))))...... ( -27.40)
>DroAna_CAF1 84146 78 + 1
AGCCCCGGCAUCCUGGCACUUUGUUUGCCGGC-AAACAUUUGUGCAGCUUAUUAAUAUGCACGCCCCGCACCU-------------------------------UCCUCG
.((...(((......((((..((((((....)-)))))...)))).((..........))..)))..))....-------------------------------...... ( -20.70)
>consensus
AGCGCCGGCAUCCUGCCACUUUGUUUGCCGGC_AAACAUUUGUGCAGCUUAUUAAUAUGCAUGCCACCCGGCUCUUCUC__________________CCCCGGCUCCUCA
.(((((((((..(.........)..))))))).........(((((...........))))))).............................................. (-17.04 = -17.27 +   0.22)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:42:38 2006