Sequence ID | 3L_DroMel_CAF1 |
---|---|
Location | 19,454,414 – 19,454,516 |
Length | 102 |
Max. P | 0.852391 |
Location | 19,454,414 – 19,454,516 |
---|---|
Length | 102 |
Sequences | 6 |
Columns | 102 |
Reading direction | forward |
Mean pairwise identity | 87.65 |
Mean single sequence MFE | -38.67 |
Consensus MFE | -29.88 |
Energy contribution | -32.27 |
Covariance contribution | 2.39 |
Combinations/Pair | 1.07 |
Mean z-score | -3.23 |
Structure conservation index | 0.77 |
SVM decision value | 0.79 |
SVM RNA-class probability | 0.852391 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 19454414 102 + 23771897 UCUUUGUCCUUGUCGGGUUGAAGCCAUGUACAAAUUAUUGUGCUAUCAGUGGCACUUCAAUGGGCUCCCAGCGGUUGCCACUUAGGGUUGCCAACGAGUGCA ....((..(((((..(((...((((..((((((....))))))....(((((((..((..(((....)))..)).)))))))...))))))).)))))..)) ( -33.40) >DroSec_CAF1 95956 102 + 1 UCUUUGUCCUUGUCGGUUGCAAGCCGUGUACAAAUUAUUGUGCUAUCAGUGGCACUUCAAUGGGCUCCCAGCAGUUGCCACUUAGGGCAGCCGACGAGUGCA ....((..((((((((((((...((..((((((....))))))....(((((((((....(((....)))..)).)))))))..))))))))))))))..)) ( -44.40) >DroSim_CAF1 96605 102 + 1 UCUUUGUCCUUGUCGGUUGCAAGCCGUGUACAAAUUAUUGUGCUAUCAGUGGCACUUCAAUGGGCUCCCAGCAGUUGCCACUUAGGGCAGCCGACGAGUGCA ....((..((((((((((((...((..((((((....))))))....(((((((((....(((....)))..)).)))))))..))))))))))))))..)) ( -44.40) >DroEre_CAF1 83185 89 + 1 UCU-------------GUACGAGUCCCGUACAAAUUAUUGUGCUAUCAGUGGCACUUCAAUGGGCUCCCAGCAGUUGCCACUUAGGGCAGCCGACAAGUGCA ..(-------------(((((.....))))))........((((...(((((((((....(((....)))..)).)))))))...))))(((.....).)). ( -28.80) >DroYak_CAF1 135619 102 + 1 UCUAUGUCCUUGUCGGGUGCAAGCCCUGUACAAAUUAUUGUGCUAUCAGUGGCACUUCAAUGGGCUCCCAGCAGUUGCCACUUAGGGCAGCCGACAAGUGCA ....((..((((((((.(....(((((((((((....))))))....(((((((((....(((....)))..)).))))))).)))))).))))))))..)) ( -43.60) >DroAna_CAF1 83392 102 + 1 UUUCUGUCCUUGUCGGGUGCAAGCCGUGUACAAAUUAUUGUGCUAUCAGUGGCACCUCAAUGGGCUUCCAGCACUUGCCACUUACGGCAGCCGACAGACGCA .....(((..((((((.(....(((((((((((....))))))....(((((((((.....))((.....))...))))))).)))))).)))))))))... ( -37.40) >consensus UCUUUGUCCUUGUCGGGUGCAAGCCGUGUACAAAUUAUUGUGCUAUCAGUGGCACUUCAAUGGGCUCCCAGCAGUUGCCACUUAGGGCAGCCGACAAGUGCA .....((.((((((((.(((.......((((((....))))))....(((((((......(((....))).....)))))))....))).)))))))).)). (-29.88 = -32.27 + 2.39)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:42:37 2006