Sequence ID | 3L_DroMel_CAF1 |
---|---|
Location | 19,453,588 – 19,453,746 |
Length | 158 |
Max. P | 0.691137 |
Location | 19,453,588 – 19,453,706 |
---|---|
Length | 118 |
Sequences | 3 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 92.50 |
Mean single sequence MFE | -30.30 |
Consensus MFE | -26.41 |
Energy contribution | -26.20 |
Covariance contribution | -0.21 |
Combinations/Pair | 1.11 |
Mean z-score | -2.01 |
Structure conservation index | 0.87 |
SVM decision value | 0.33 |
SVM RNA-class probability | 0.691137 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 19453588 118 + 23771897 UGCGCAGGUCAUCAUCUAAAUUAUCAACAUGUGAUCACUU--GACGAAAUAAAUUUGCAAAUGUAUGUCAAAAAUGAUGGUGGUGGCAGCGUGAUAGGAAACUAUCGAUAGGAUCAGGAG .((((..(((((((((...(((.(..(((((....((.((--(.((((.....))))))).)))))))..).)))...))))))))).))))(((((....))))).............. ( -30.60) >DroSec_CAF1 94649 120 + 1 UGCGCAGAUCCUCUUCUAAAUUAUCAACACGUGAUUACUUACAACGAAAUAAAUGUACAAAUGUAGGUCAAAAAUGAUGGUGGUGGCAGUGUGAUAGGAAACUAUCGAUAGGAUCAGGAG ......((((((..((..........((((((.((((((................(((....))).((((....)))))))))).)).))))(((((....))))))).))))))..... ( -30.40) >DroSim_CAF1 95322 120 + 1 UGCGCAGAUCCUCUUCUAAAUUAUCAACACGUGAUUACUUACAACGAAAUAAAUCUACAAAUGUAUGUCAAAAAUGAUGGUGGUGGCAGUGUGAUAGGAAACUAUCGAUAGGAUCGGGAG ......((((((..((..........((((((.((((((................(((....))).((((....)))))))))).)).))))(((((....))))))).))))))..... ( -29.90) >consensus UGCGCAGAUCCUCUUCUAAAUUAUCAACACGUGAUUACUUACAACGAAAUAAAUCUACAAAUGUAUGUCAAAAAUGAUGGUGGUGGCAGUGUGAUAGGAAACUAUCGAUAGGAUCAGGAG ........((((..(((....((((.((((((.((((((................(((....))).((((....)))))))))).)).))))(((((....))))))))))))..)))). (-26.41 = -26.20 + -0.21)
Location | 19,453,628 – 19,453,746 |
---|---|
Length | 118 |
Sequences | 3 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 89.69 |
Mean single sequence MFE | -26.33 |
Consensus MFE | -21.19 |
Energy contribution | -21.87 |
Covariance contribution | 0.67 |
Combinations/Pair | 1.11 |
Mean z-score | -2.20 |
Structure conservation index | 0.80 |
SVM decision value | 0.31 |
SVM RNA-class probability | 0.681968 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 19453628 118 + 23771897 --GACGAAAUAAAUUUGCAAAUGUAUGUCAAAAAUGAUGGUGGUGGCAGCGUGAUAGGAAACUAUCGAUAGGAUCAGGAGUGCAGUUGGCAGGAAUGAUCGAAAAAGAAGUUGCAAACUA --...........(((((((.....((((.......(((.((....)).)))(((((....))))))))).(((((....(((.....)))....)))))..........)))))))... ( -28.40) >DroSec_CAF1 94689 119 + 1 ACAACGAAAUAAAUGUACAAAUGUAGGUCAAAAAUGAUGGUGGUGGCAGUGUGAUAGGAAACUAUCGAUAGGAUCAGGAGGUCUGAUGGCAGGAAUGAUCGAAA-AUAAGUUGCUGAGUU .((.((......((.(((....))).))......)).))..((..((....((((((....))))))....(((((....(((....))).....)))))....-....))..))..... ( -25.10) >DroSim_CAF1 95362 119 + 1 ACAACGAAAUAAAUCUACAAAUGUAUGUCAAAAAUGAUGGUGGUGGCAGUGUGAUAGGAAACUAUCGAUAGGAUCGGGAGUUCUGAUGGCAGGAAUGAUCGAAA-AUAAGUUGCUGAGUU .((((.......(((.(((......(((((...((....))..))))).)))(((((....))))))))..(((((....(((((....))))).)))))....-....))))....... ( -25.50) >consensus ACAACGAAAUAAAUCUACAAAUGUAUGUCAAAAAUGAUGGUGGUGGCAGUGUGAUAGGAAACUAUCGAUAGGAUCAGGAGUUCUGAUGGCAGGAAUGAUCGAAA_AUAAGUUGCUGAGUU ...............(((....))).((((....))))..(((..((....((((((....))))))....(((((....(((((....))))).))))).........))..))).... (-21.19 = -21.87 + 0.67)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:42:36 2006