Locus 7263

Sequence ID 3L_DroMel_CAF1
Location 19,428,654 – 19,428,747
Length 93
Max. P 0.872805
window11809

overview

Window 9

Location 19,428,654 – 19,428,747
Length 93
Sequences 3
Columns 100
Reading direction forward
Mean pairwise identity 70.75
Mean single sequence MFE -17.91
Consensus MFE -9.47
Energy contribution -9.70
Covariance contribution 0.23
Combinations/Pair 1.27
Mean z-score -1.95
Structure conservation index 0.53
SVM decision value 0.88
SVM RNA-class probability 0.872805
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 19428654 93 + 23771897
ACCCACUCGGGCACCCACUUAUCCCCA-GAAA-ACCACAUA----CACACACAU-CACCAAUGGGCCAUAACUCGUCCUUAGAACCAUAGACGAAGCCAA
.........(((...........((((-....-........----.........-......)))).......(((((............))))).))).. ( -12.73)
>DroPse_CAF1 34666 94 + 1
-----CCUGGUGACCCACCA-CCACCACCCAAAACCAUUCACCCACCGGUACACCGACUCAUGUGCCAUAAUUCGUUCUAAGAAACGUAGACGGGGCCAC
-----..(((((......))-))).................(((...((((((........))))))......(((.(((.......))))))))).... ( -20.50)
>DroPer_CAF1 34650 94 + 1
-----CCUGGUGACCCACCA-CCACCACCCAAAACCAUUCACCCACCGGUACACCGACUCAUGUGCCAUAAUUCGUUCUAAGAAACGUAGACGGGGCCAC
-----..(((((......))-))).................(((...((((((........))))))......(((.(((.......))))))))).... ( -20.50)
>consensus
_____CCUGGUGACCCACCA_CCACCACCCAAAACCAUUCACCCACCGGUACACCGACUCAUGUGCCAUAAUUCGUUCUAAGAAACGUAGACGGGGCCAC
........((((..........)))).....................((((((........)))))).....(((((............)))))...... ( -9.47 =  -9.70 +   0.23)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:42:33 2006