Locus 7261

Sequence ID 3L_DroMel_CAF1
Location 19,427,050 – 19,427,150
Length 100
Max. P 0.823306
window11805

overview

Window 5

Location 19,427,050 – 19,427,150
Length 100
Sequences 6
Columns 112
Reading direction reverse
Mean pairwise identity 79.27
Mean single sequence MFE -32.76
Consensus MFE -17.49
Energy contribution -18.05
Covariance contribution 0.56
Combinations/Pair 1.33
Mean z-score -2.26
Structure conservation index 0.53
SVM decision value 0.69
SVM RNA-class probability 0.823306
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 19427050 100 - 23771897
CUCCGCUUGCACAUGCCAAUGGUGCAGUAAAUUCUUUAAGGACUCGCACAUCGAAU--CCGCACAGGAAAUGUGUGUAUGCGCACGUGGGG-AGC---------UACAUCGC
((((((.(((.(((((.....(((((((.............))).)))).......--..(((((.....)))))))))).))).))))))-...---------........ ( -30.32)
>DroSec_CAF1 65560 100 - 1
CUCCGCUUGCACAUGCCAAUGGUGCAGUAAAUUCUUUAAGGACUCGCACAUCGAAU--CCGCACAGAAAAUGUGUGUAUGUGCACGUGGGG-AGC---------UACAUCGC
((((((.(((((((((.....(((((((.............))).)))).......--..(((((.....)))))))))))))).))))))-...---------........ ( -34.22)
>DroSim_CAF1 67206 100 - 1
CUCCGCUUGCACAUGCCAAUGGUGCAGUAAAUUCUUUAAGGACUCGCACAUCGACU--CCGCACAGGAAAUGUGUGUAUGUGCACGUGGGG-AGC---------UACAUCGC
((((((.(((((((((.....(((((((.............))).)))).......--..(((((.....)))))))))))))).))))))-...---------........ ( -34.22)
>DroEre_CAF1 62231 91 - 1
CUCCGCUUGCACAUGCCAAUGGUGCAGUAAAUUCUUGU---------ACAGUAAGUUCCUGCACAGGAAAUGUGUGUGUGUGCACGUG--G-AGC---------UACAUCGC
((((((.(((((((((((...((((((.......))))---------))......(((((....)))))...)).))))))))).)))--)-)).---------........ ( -33.30)
>DroYak_CAF1 105838 97 - 1
CUCCGC-UGCACAUGCCAAUGGUGCAGUAAAUUCUUUUAGGAUUCGCACAGCGAAU--CCGCACAGGAAAUGUGUGUAUGUGCACGUG--G-AGC---------UACAUCGC
((((((-(((((((((((...((((..((((....))))((((((((...))))))--))))))........)).))))))))).)))--)-)).---------........ ( -41.20)
>DroAna_CAF1 60317 110 - 1
AUUCACAUGCCCCUAGCAAUAGUGCAGUAAAUUCUUAAAGGUCUCAAAUAUCGAAU--CCUUACAGGAUAUCUCUCUAUGUGUGUGUGUGUGUGUUUACUCUCACACAUCGC
...(((((((.....)).((((.(.((...(((((..((((..((.......))..--))))..)))))..))).))))))))).(((((((((........)))))).))) ( -23.30)
>consensus
CUCCGCUUGCACAUGCCAAUGGUGCAGUAAAUUCUUUAAGGACUCGCACAUCGAAU__CCGCACAGGAAAUGUGUGUAUGUGCACGUGGGG_AGC_________UACAUCGC
...(((.(((((((((.....((((....................))))...........(((((.....)))))))))))))).)))........................ (-17.49 = -18.05 +   0.56)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:42:29 2006