Locus 7259

Sequence ID 3L_DroMel_CAF1
Location 19,425,358 – 19,425,457
Length 99
Max. P 0.515515
window11803

overview

Window 3

Location 19,425,358 – 19,425,457
Length 99
Sequences 6
Columns 99
Reading direction forward
Mean pairwise identity 81.04
Mean single sequence MFE -30.65
Consensus MFE -21.05
Energy contribution -21.00
Covariance contribution -0.05
Combinations/Pair 1.31
Mean z-score -1.26
Structure conservation index 0.69
SVM decision value -0.04
SVM RNA-class probability 0.515515
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 19425358 99 + 23771897
UCGGCACCCAAAGCGGAUUUCAAGGAGCUGCGUCAGCACGCACAUAUGUAUGUAUGUGUGUGGGUGGUCCGGAAAGGGGAAUCCCUUUGCCCACCAGCA
...((.......((((.(((....))))))).....(((((((((((....)))))))))))(((((...(.((((((....)))))).)))))).)). ( -39.00)
>DroSec_CAF1 63863 93 + 1
UCGACAGACAAAGCGGAUUUCAAGGAGCUGCGUCAGCACUCACAUAUGUAU------GUGUGGGUGGUCCGGAAAGGGGAAUCCCUUCGCCCAUCAGCA
..(((.(((...((((.(((....))))))))))..((((((((((....)------)))))))))))).((..(((((...)))))..))........ ( -30.30)
>DroSim_CAF1 65511 89 + 1
UCGACAGCCAAAGCAGAUUUCAAGGAGCUGCGUCAGCACGCACAUAU----------GUGUGGGUGGUCCGGAAAGGGGAGUCCCUUCGCCCAUCAGCA
..(((.(((...((((.(((....))))))).....((((((....)----------)))))))).))).((..(((((...)))))..))........ ( -27.70)
>DroEre_CAF1 60556 88 + 1
UCGGCACCCAAAGCGGAUUUCAAGGAGCUGCGUCAGCACGCACACAU----------GUGUGGGUGGUCCGGA-AGGGAAAACCCUUUGCCCACCAGCA
..(((........(((((..(.....((((...)))).(((((....----------))))).)..)))))((-((((....)))))))))........ ( -29.90)
>DroYak_CAF1 104168 88 + 1
UCGGCACCCAAAGCGGAUUUCCAGGAGCUGCGUCAGCACGCAUACAU----------GUGUGGGUGGUCCGGA-AGGGGAAACCCUUUGCCCACCAGCA
..(((........(((((..((....((((...)))).(((((....----------)))))))..)))))((-((((....)))))))))........ ( -35.40)
>DroAna_CAF1 58603 80 + 1
UCGUUACCCAAAGCGGAUUCGAAGGAGCUGUGUCAGCACCCACAGAC----------AUGUGUGUG------A-A--GGAAACCCUUUCGGCACAAACA
(((((......))))).(((....))).((((((..(((.((((...----------.)))).)))------(-(--((....))))..)))))).... ( -21.60)
>consensus
UCGGCACCCAAAGCGGAUUUCAAGGAGCUGCGUCAGCACGCACAUAU__________GUGUGGGUGGUCCGGA_AGGGGAAACCCUUUGCCCACCAGCA
............((((.(((....)))))))....((...(((((............)))))(((((..(((..((((....))))))).))))).)). (-21.05 = -21.00 +  -0.05)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:42:27 2006