Locus 7258

Sequence ID 3L_DroMel_CAF1
Location 19,422,139 – 19,422,238
Length 99
Max. P 0.904179
window11802

overview

Window 2

Location 19,422,139 – 19,422,238
Length 99
Sequences 5
Columns 105
Reading direction reverse
Mean pairwise identity 70.65
Mean single sequence MFE -15.02
Consensus MFE -3.70
Energy contribution -3.66
Covariance contribution -0.04
Combinations/Pair 1.10
Mean z-score -2.02
Structure conservation index 0.25
SVM decision value 1.03
SVM RNA-class probability 0.904179
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 19422139 99 - 23771897
AGAACUUUUC-CAGCGCUAAUUGCAAGGGAUUUUCUUCCUCUUCUGCUGCUGGUUUUUCUUCGAUUCCCCC---UCCGCCACCGACACUGCC--AACACUCUUCU
.(((.....(-((((((.....))((((((......))).))).....)))))......))).........---..................--........... ( -15.70)
>DroPse_CAF1 25665 87 - 1
AGAACUUUUCCCAGCGCUAAUUGCAAGAGAUUUUCCUU-----CUCC------UUAUACUUCGCCUGCUGCUCCUCAGCUG----CUUU---UCCUAGUUUUCCU
((((((......(((((.....))..((((.......)-----))).------.............((((.....)))).)----))..---....))))))... ( -14.10)
>DroSec_CAF1 60874 88 - 1
AGAACUUUUC-CAGCGCUAAUUGCAAGGGAUUUUCUUCCUCUUCUGCUGCUGGUUUUUCUUCGACGCCCCC---CUCCCCA-------------AACACUCUUCU
.(((.....(-((((((.....))((((((......))).))).....)))))......))).........---.......-------------........... ( -15.70)
>DroEre_CAF1 57450 91 - 1
AGAACUUUUC-CGGCGCUAAUUGCAAGAGAUUUUCUUCCUCUUCUGCUGCUGGUUUUUCU-CGACUCCCCC---UCCACCG----CUUC-----ACCACUUUUCU
((((.....(-((((((.....))(((((.........))))).....)))))...))))-..........---.......----....-----........... ( -13.30)
>DroYak_CAF1 100936 94 - 1
AGAAGUUUUC-CAGCGCUAAUUGCAAAAGAUUUUCUUCCUCUUCUGCUGCUGGUCUUUCUUCAACUCCCCC--CGCCACAU---CCAUC-----GCCAUCUUUUU
.((((....(-(((((......(((.((((.........)))).))))))))).....)))).........--........---.....-----........... ( -16.30)
>consensus
AGAACUUUUC_CAGCGCUAAUUGCAAGAGAUUUUCUUCCUCUUCUGCUGCUGGUUUUUCUUCGACUCCCCC___UCCACCA____CAUC_____AACACUUUUCU
.(((..((((...(((.....)))..))))..)))...................................................................... ( -3.70 =  -3.66 +  -0.04)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:42:26 2006