Locus 7254

Sequence ID 3L_DroMel_CAF1
Location 19,413,951 – 19,414,066
Length 115
Max. P 0.888639
window11791

overview

Window 1

Location 19,413,951 – 19,414,066
Length 115
Sequences 5
Columns 115
Reading direction forward
Mean pairwise identity 91.83
Mean single sequence MFE -38.82
Consensus MFE -34.56
Energy contribution -34.56
Covariance contribution -0.00
Combinations/Pair 1.11
Mean z-score -1.45
Structure conservation index 0.89
SVM decision value 0.95
SVM RNA-class probability 0.888639
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 19413951 115 + 23771897
UGCACGAGAUCUUGGAACCGCAUAUGCUCCGUCGCCUUAAGGCGGAUGUAUUGAAGAGCAUGCCCCCAAAGUCGGAGUUCAUUGUGCGCGUGGAGCUGUCGUCUAUGCAAAAAAA
((((..((((..(((.((((((((.((((((.((((....)))((((((........)))).))......).))))))....)))))).))....)))..)))).))))...... ( -36.80)
>DroSec_CAF1 52723 115 + 1
UGCAUGAGAUCUUGGAACCGCAUAUGCUCCGUCGCCUAAAGGCGGAUGUAUUGAAGAGCAUGCCCCCGAAGUCGGAGUUCAUUGUGCGCGUGGAGCUGUCGUCUAUGCAAAAGAA
(((((.((((..(((.((((((((.((((((.((((....)))((((((........)))).))......).))))))....)))))).))....)))..)))))))))...... ( -38.50)
>DroSim_CAF1 53808 115 + 1
UGCAUGAGAUCUUGGAACCGCAUAUGCUCCGUCGCCUAAAGGUGGAUGUAUUGAAGAGCAUGCCCCCGAAGUCGGAGUUCAUUGUGCGCGUGGAGCUGUCGUCUAUGCAAAAGAA
(((((.((((..(((.((((((((.((((((.(.......((.((((((........)))).)).))...).))))))....)))))).))....)))..)))))))))...... ( -35.80)
>DroEre_CAF1 49169 115 + 1
UGCAUGAGAUCUUGGGACCGCAUAUGCUCCGUCGCCUCAAGGCGGAUGUCCUUAAGAACAUGCCCUCGAAGUCUGAGUUUAUUGUACGCGUGGAGCUCUCGUCCAUGCAAAAGAA
.(((((...(((((((((.((....))((((((.......)))))).)))).))))).))))).((((.....))))..........(((((((.......)))))))....... ( -36.60)
>DroYak_CAF1 79136 115 + 1
UGCAUGAGAUCUUAGCACCGCAUAUGCUCCGUCGCCUAAAGGCGGAUGUCCUUAAGAACAUGCCCUCAAAGGCGGAGUUUAUUGUGCGCGUGGAGCUGUCGUCCAUGCAAAAGAA
((((((.(((..((((((((((((.(((((((((((....)))((((((.(....).)))).))......))))))))....)))))).))...))))..)))))))))...... ( -46.40)
>consensus
UGCAUGAGAUCUUGGAACCGCAUAUGCUCCGUCGCCUAAAGGCGGAUGUAUUGAAGAGCAUGCCCCCGAAGUCGGAGUUCAUUGUGCGCGUGGAGCUGUCGUCUAUGCAAAAGAA
((((((.(((..(((.((((((((.((((((.((((....)))((((((........)))).))......).))))))....)))))).))....)))..)))))))))...... (-34.56 = -34.56 +  -0.00)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:42:15 2006