Locus 7253

Sequence ID 3L_DroMel_CAF1
Location 19,413,751 – 19,413,871
Length 120
Max. P 0.564437
window11790

overview

Window 0

Location 19,413,751 – 19,413,871
Length 120
Sequences 5
Columns 120
Reading direction forward
Mean pairwise identity 93.25
Mean single sequence MFE -33.80
Consensus MFE -27.74
Energy contribution -27.94
Covariance contribution 0.20
Combinations/Pair 1.14
Mean z-score -1.35
Structure conservation index 0.82
SVM decision value 0.06
SVM RNA-class probability 0.564437
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 19413751 120 + 23771897
GAGCAACCAGAGCAAGUUUUUUAGGAUCCUGAGCAAGUACCGCAUCGGCUACAAGCUGCUGCUGACCGGCACUCCGCUUCAGAACAAUCUCGAGGAGCUGUUCCAUCUGCUCAAUUUCCU
(((((....(((((.((((((..((((.((((((.(((.(((..(((((..(.....)..))))).))).)))..)).))))....))))..)))))))))))....)))))........ ( -39.10)
>DroSec_CAF1 52523 120 + 1
GAGCAACCAGAGCAAGUUUUUUAGGAUCCUGAGCAGGUACCGCAUCGCCUACAAGCUGCUGCUGACCGGCACUCCGCUUCAGAACAAUCUCGAGGAGCUGUUCCAUCUGCUCAAUUUCCU
(((((....(((((.((((((..((((.((((((.(((.....)))(((....(((....)))....))).....)).))))....))))..)))))))))))....)))))........ ( -36.10)
>DroSim_CAF1 53608 120 + 1
GAGCAACCAGAGCAAGUUUUUUAGGAUCCUAAGCAGGUACCGCAUCGCCUACAAGCUGCUGCUGACCGGCACUCCGCUUCAGAACAAUCUCGAGGAGCUGUUCCAUCUGCUCAAUUUCCU
(((((....(((((.((((((..((((.((((((.(((.....)))(((....(((....)))....))).....)))).))....))))..)))))))))))....)))))........ ( -33.80)
>DroEre_CAF1 48969 120 + 1
GAGCAACCAUAGCAAGUUUUUUAGGACGCUGAGCAAGUACCGCAUCGCCUACAAGCUGCUGCUGACCGGCACUCCGCUUCAGAACAAUCUCGAAGAGCUGUUUCAUCUGCUCAAUUUCCU
(((((.....((((.((((((..(((..((((((..(.....)...(((....(((....)))....))).....)).)))).....)))..)))))))))).....)))))........ ( -32.50)
>DroYak_CAF1 78936 120 + 1
AAACAACCAGAGCAAGUUUUUCAGGAUGCUGAACAAGUACCGUAUUGUCUACAAGCUGCUGCUGACCGGCACUCCGCUUCAAAACAAUCUUGAGGAGCUGUUUUAUCUGCUUAAUUUCCU
.......((((...(((((((((((((..(((((.(((.(((....(((....(((....))))))))).)))..).)))).....)))))))))))))......))))........... ( -27.50)
>consensus
GAGCAACCAGAGCAAGUUUUUUAGGAUCCUGAGCAAGUACCGCAUCGCCUACAAGCUGCUGCUGACCGGCACUCCGCUUCAGAACAAUCUCGAGGAGCUGUUCCAUCUGCUCAAUUUCCU
(((((....(((((.(((((((.((((.((((((.(((.(((...........(((....)))...))).)))..)).))))....)))).))))))))))))....)))))........ (-27.74 = -27.94 +   0.20)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:42:12 2006