Locus 7252

Sequence ID 3L_DroMel_CAF1
Location 19,413,355 – 19,413,475
Length 120
Max. P 0.925432
window11789

overview

Window 9

Location 19,413,355 – 19,413,475
Length 120
Sequences 5
Columns 120
Reading direction forward
Mean pairwise identity 93.67
Mean single sequence MFE -40.46
Consensus MFE -33.38
Energy contribution -33.22
Covariance contribution -0.16
Combinations/Pair 1.13
Mean z-score -1.82
Structure conservation index 0.83
SVM decision value 1.17
SVM RNA-class probability 0.925432
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 19413355 120 + 23771897
CCAAGGCAUCCCCACCAUACUGGCUGACGAGAUGGGUCUGGGCAAGACCAUUCAGACCGUGGUUUUUCUUUACUCACUAUUUAAGGAGGGACAUUGCCGCGGACCCUUCCUCAUAUCCGU
....((......((((.....)).))..(((..((((((((((((...(((.......)))(((((((((((.........))))))))))).))))).)))))))...)))....)).. ( -34.50)
>DroSec_CAF1 52127 120 + 1
CCAAGGCAUCCCCACCAUACUGGCCGACGAGAUGGGUCUGGGCAAGACCAUUCAGACCGUGGUUUUUCUUUACUCACUAUUUAAGGAGGGCCAUUGCCGCGGACCCUUCCUCAUAUCCGU
....(((...............)))...(((..((((((((((((((....))......(((((((((((............)))))))))))))))).)))))))...)))........ ( -36.46)
>DroSim_CAF1 53212 120 + 1
CCAAGGCAUCCCCACCAUACUGGCCGACGAGAUGGGUCUGGGCAAGACCAUUCAGACCGUGGUUUUCCUUUACUCCCUUUUUAAGGAGGGCCAUUGCCGCGGACCCUUCCUCAUAACCGU
....(((...............)))...(((..((((((((((((((....))......(((((((((((............)))))))))))))))).)))))))...)))........ ( -39.36)
>DroEre_CAF1 48573 120 + 1
UCAGAGCAUCCGCACCAUACUGGCCGACGAGAUGGGUCUGGGCAAGACCAUUCAGACAGUGGUUUUCCUUUACUCACUGUUUAAGGAGGGCCACUGUCGGGGACCCUUUCUCAUAUGCGU
..........((((((.....)).....((((.((((((((......)).....((((((((((((((((.((.....))..))))))))))))))))..))))))..))))...)))). ( -50.10)
>DroYak_CAF1 78540 120 + 1
CCAAGGCAUCCCCACCAUACUGGCCGACGAGAUGGGUCUGGGCAAGACCAUUCAGACAGUGGUUUUUCUUUACUCCCUGUUUAAGGAGGGCCAUUGUCGCGGACCCUUCCUCAUAUCCGU
....(((...............)))...(((..(((((((((.....)).....((((((((((((((((.((.....))..)))))))))))))))).)))))))...)))........ ( -41.86)
>consensus
CCAAGGCAUCCCCACCAUACUGGCCGACGAGAUGGGUCUGGGCAAGACCAUUCAGACCGUGGUUUUUCUUUACUCACUAUUUAAGGAGGGCCAUUGCCGCGGACCCUUCCUCAUAUCCGU
....(((...............)))...(((..(((((((((((.((....)).....((((((((((((............)))))))))))))))).)))))))...)))........ (-33.38 = -33.22 +  -0.16)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:42:11 2006