| Sequence ID | 3L_DroMel_CAF1 |
|---|---|
| Location | 19,411,722 – 19,411,839 |
| Length | 117 |
| Max. P | 0.559972 |
| Location | 19,411,722 – 19,411,839 |
|---|---|
| Length | 117 |
| Sequences | 5 |
| Columns | 120 |
| Reading direction | reverse |
| Mean pairwise identity | 72.70 |
| Mean single sequence MFE | -26.40 |
| Consensus MFE | -2.88 |
| Energy contribution | -2.60 |
| Covariance contribution | -0.28 |
| Combinations/Pair | 1.53 |
| Mean z-score | -1.46 |
| Structure conservation index | 0.11 |
| SVM decision value | 0.05 |
| SVM RNA-class probability | 0.559972 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 19411722 117 - 23771897 UUAAUUUAGCGGGAAGUUCUCUG-AAACUAAAAAAUCAAGAUUUUUUAAAUAAAUGCUAGUUUAGA--CUUCACAUUUUGUAGAAGUGUUUAAACAUUAGCGUUAAUACACAGACAACAA ...............(((.((((-....((((((((....))))))))....((((((((((((((--((((((.....)).)))))..))))))..)))))))......)))).))).. ( -23.90) >DroSec_CAF1 50524 119 - 1 UUAAUUUAGCGGGAUGUUCUCUG-AAGCUAACAAAUCCAGAUGUUUUACCUUAAUGCUUGAUUAAAGCGUUUACAUUUUGGUGAAGUGCUUGAACAUUAGCGAUAUUCUGCUGAGAACAA ....((((((((((((((.....-..(((((....((.((.(..((((((..(((((((.....)))))))........))))))..))).))...)))))))))))))))))))..... ( -30.71) >DroSim_CAF1 51614 119 - 1 UUAAUUUAGCGGGAUGUUCUCUG-AAGCUAACAAAUCCAGAUGUUUUACCUUAAUGCUUGAUUAAAGCGUUUACAUUUUGGUGAAGUGCUUGAACAUUAGCGAUAUUCUGCUGAGAACAA ....((((((((((((((.....-..(((((....((.((.(..((((((..(((((((.....)))))))........))))))..))).))...)))))))))))))))))))..... ( -30.71) >DroEre_CAF1 47080 115 - 1 UAAAUGUAGUCGGAAGGUCUCCCAAAAGGAACAACUCCAGAUUACUUACAUCAGUGCUAGCCUAAGG-----GCAUUUUGGAGAAGAGUUUGAUCAUUUGCGAUAGCAGCCCUAAAGCAA ....(((.((((.(((((((((.....)))....(((((((.((((......))))...(((....)-----))..)))))))........))))..)).)))).)))((......)).. ( -26.70) >DroYak_CAF1 76824 114 - 1 UUAAUUUAAUGGGAAGUUCUCCG-AAACUAUCAACUCCAGAUUGCUUAGAUUAUUGCUAGUUUUAAG-----GUAUUUUGAAGAAGCGCUACAACAAUUGCGUUAACAUCCCUGAAACAA ..........((((.(((.....-..........((.((((.(((((((((((....))))))..))-----))).)))).)).(((((..........)))))))).))))........ ( -20.00) >consensus UUAAUUUAGCGGGAAGUUCUCUG_AAACUAACAAAUCCAGAUUUUUUACAUUAAUGCUAGAUUAAAG__UU_ACAUUUUGGAGAAGUGCUUGAACAUUAGCGAUAAUAUCCCGAAAACAA ........((.(((.....))).................................(((..(((((((........)))))))..)))............))................... ( -2.88 = -2.60 + -0.28)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:42:10 2006