| Sequence ID | 3L_DroMel_CAF1 |
|---|---|
| Location | 19,409,189 – 19,409,284 |
| Length | 95 |
| Max. P | 0.835558 |
| Location | 19,409,189 – 19,409,284 |
|---|---|
| Length | 95 |
| Sequences | 6 |
| Columns | 120 |
| Reading direction | reverse |
| Mean pairwise identity | 80.43 |
| Mean single sequence MFE | -30.88 |
| Consensus MFE | -19.27 |
| Energy contribution | -19.60 |
| Covariance contribution | 0.33 |
| Combinations/Pair | 1.00 |
| Mean z-score | -2.13 |
| Structure conservation index | 0.62 |
| SVM decision value | 0.73 |
| SVM RNA-class probability | 0.835558 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 19409189 95 - 23771897 AC-GCUACGAGUUCCCAGCUACGAGCU------------------------CCGAGACCAAGGCAAUUCGCCUGCAUAUUUGUGUGGCUUAGUUUCCGUUUCACAAACGAAACGAAAUGA ..-(((((((((((........)))))------------------------)((((....((((.....)))).....)))).)))))...(((((.(((((......)))))))))).. ( -26.60) >DroSec_CAF1 48034 102 - 1 AA-GCUACGAGUUACCAGCUACGAGCUCCG-------AGCU----------CCGAGGCCAAGGCAAUUCGCCUGCAUAUUUGUGUGGCUUAGCUUCCGUUUCACAAACGAAACGAAAUGA ((-(((..(((((...(((.....)))...-------))))----------)..((((((((((.....))))(((....))).))))))))))).((((((......))))))...... ( -31.90) >DroSim_CAF1 49087 109 - 1 AA-GCUACGAGUUACCAGCUACGAGCUCCGAGCUCCGAGCU----------CCGAGGCCAAGGCAAUUCGCCUGCAUAUUUGUGUGGCUUAGUUUCCGUUUCACAAACGAAACGAAAUAA ((-((((((((((.((.(((.(((((((.(....).)))))----------.)).)))...)).)))))....(((....)))))))))).(((((.(((((......)))))))))).. ( -35.00) >DroEre_CAF1 44468 88 - 1 AA-GCUCCGAGUUC--------------CG-------AGCU----------CCGAGGCCAAGGCAAUUCGCCUGCAUAUUUGUGUGGCUUAGUUUUCGUUUCACAAACGAAACGAAAUGA .(-((((.(....)--------------.)-------))))----------...((((((((((.....))))(((....))).))))))...(((((((((......)))))))))... ( -29.10) >DroYak_CAF1 74181 88 - 1 AA-GCUACGAGUUC--------------CG-------AGCU----------CCGAGGCCAAGGCAAUUCGCCUGCAUAUUUGUGUGGCUUAGUUUUCGUUUCACAAACGAAACGAAAUGA ((-(((((((((..--------------..-------.)))----------)((((....((((.....)))).....)))).)))))))...(((((((((......)))))))))... ( -28.30) >DroAna_CAF1 46925 104 - 1 AAAGCU--GAGCUCAGAGCUC-------CG-------AGUUGCUUGUGUUGCGGAGGCCAAGGCAAUUCGCCUGCAUAUUUGUGUGGCUUAGUUUCCGUUUCACAAACGAAACGAAAUGA ......--((((.....))))-------((-------..(((.(((((..((((((((((((((.....))))(((....))).))))).....)))))..))))).)))..))...... ( -34.40) >consensus AA_GCUACGAGUUCCCAGCUA_______CG_______AGCU__________CCGAGGCCAAGGCAAUUCGCCUGCAUAUUUGUGUGGCUUAGUUUCCGUUUCACAAACGAAACGAAAUGA ......................................................((((((((((.....))))(((....))).)))))).((((.((((((......)))))))))).. (-19.27 = -19.60 + 0.33)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:42:09 2006