| Sequence ID | 3L_DroMel_CAF1 |
|---|---|
| Location | 2,201,896 – 2,201,988 |
| Length | 92 |
| Max. P | 0.931597 |
| Location | 2,201,896 – 2,201,988 |
|---|---|
| Length | 92 |
| Sequences | 6 |
| Columns | 111 |
| Reading direction | forward |
| Mean pairwise identity | 77.17 |
| Mean single sequence MFE | -27.47 |
| Consensus MFE | -19.05 |
| Energy contribution | -18.83 |
| Covariance contribution | -0.22 |
| Combinations/Pair | 1.17 |
| Mean z-score | -1.75 |
| Structure conservation index | 0.69 |
| SVM decision value | 1.21 |
| SVM RNA-class probability | 0.931597 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 2201896 92 + 23771897 CCAGGGA----------------ACCGAAGAGCUGGCGAAACAAGCUGGCAAAAGUUGGUUAGUUAAAAGUGUUUGUCAUUGUUGACACCUUUCGUCUUGGCAAGGCG--- ..(((((----------------(((((...((..((.......))..)).....)))))).(((((.((((.....)))).))))).)))).(((((.....)))))--- ( -25.90) >DroSec_CAF1 253886 97 + 1 CCAGGGA--------ACCAGAGAACCGAAGAGCCGGCGAAACAAGCCGGCAAAAGUUGGUUAGUUAAAAGUGUUUGUCAUUGUUGACACCUUUCGUCUUGGCAAG------ ((((((.--------...((((((((((...((((((.......)))))).....)))))).(((((.((((.....)))).)))))..))))..))))))....------ ( -32.00) >DroSim_CAF1 254404 97 + 1 CCAGGGA--------ACCAGAGAACCGAAGAGCCGGCGAAACAAGCCGGCAAAAGUUGGUUAGUUAAAAGUGUUUGUCAUUGUUGACACCUUUCGUCUUGGCAAG------ ((((((.--------...((((((((((...((((((.......)))))).....)))))).(((((.((((.....)))).)))))..))))..))))))....------ ( -32.00) >DroEre_CAF1 260819 105 + 1 CCAGACAACCAGAGAACCAGAGAACCGAAGAGCCGGCGAAACAAGCCGGCAAAAGUUGGUUAGUUAAAAGUGUUUGUCAUUGUUGACACCUUUCGUCUUGCCAAG------ ...........((((...((((((((((...((((((.......)))))).....)))))).(((((.((((.....)))).)))))..))))..))))......------ ( -29.00) >DroAna_CAF1 248233 77 + 1 -CAG----------------AAGG-----CAGCCGGCGAAACAAGCCGGCCAAAGUUGGUUAGUUAAAAGUGUUUGUCAUUGUUGACACCUUUCGUCUU------------ -...----------------((((-----(.((((((.......)))))).......(((..(((((.((((.....)))).))))))))....)))))------------ ( -24.50) >DroPer_CAF1 278686 94 + 1 CCAGUAA--------GUCAC---AACGAA------AUGAAACAAGCCAGCAAAAGUUGGUUAGUUAAAAGUGUUUGUCAUUGCUGACACCUUUCGUCUACGCCCAGCGAAU .((((((--------(.((.---((((..------....(((.(((((((....))))))).))).....)))))).).))))))......((((.((......)))))). ( -21.40) >consensus CCAGGGA________ACCAGAGAACCGAAGAGCCGGCGAAACAAGCCGGCAAAAGUUGGUUAGUUAAAAGUGUUUGUCAUUGUUGACACCUUUCGUCUUGGCAAG______ ..................................(((((((..(((((((....))))))).(((((.((((.....)))).)))))...))))))).............. (-19.05 = -18.83 + -0.22)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:49:33 2006