Locus 7245

Sequence ID 3L_DroMel_CAF1
Location 19,402,059 – 19,402,166
Length 107
Max. P 0.580458
window11778

overview

Window 8

Location 19,402,059 – 19,402,166
Length 107
Sequences 6
Columns 109
Reading direction reverse
Mean pairwise identity 83.84
Mean single sequence MFE -26.41
Consensus MFE -19.63
Energy contribution -20.47
Covariance contribution 0.84
Combinations/Pair 1.21
Mean z-score -1.78
Structure conservation index 0.74
SVM decision value 0.09
SVM RNA-class probability 0.580458
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 19402059 107 - 23771897
UACCCUUUGUGAAGGGUGUGACGACCUCAUAGACACACUCA--AACAGCCGCAAAGGCAAUCAAGUGUCGCUGAAAACAAAACACACAACAUAAUGAGAAUGGGGUUGU
(((((((....)))))))..((((((((((.(((((.....--....(((.....)))......))))).................((......))...)))))))))) ( -29.06)
>DroSec_CAF1 41285 107 - 1
UACCUUUUCUACAGGGUGUAACGACCUCAUAGACACAGUCA--AACAGCCGCAAAGGCAAUCAAGUGUCCCUGAAAACAAAACACACGACAUAAUGGCAAUGGGGUUGA
((((((......))))))...(((((((((.(.((..(((.--....(((.....)))......((((...((....))..))))..)))....)).).))))))))). ( -27.00)
>DroSim_CAF1 41193 107 - 1
UACCCUUUCUGCAGGGUGUGACGACCUCAUAGACACAGUCA--AACAGCCGCAAAGGCAAUCAAGUGUCGCUGAAAACAAAACACACGACAUAAUGGCAAUGGAGUUGA
((((((......))))))...((((..(((.(((...))).--....(((((....))......((((((.((...........))))))))...))).)))..)))). ( -27.50)
>DroEre_CAF1 36186 107 - 1
UACCCUUUGCGAAGGGUAAGCCGACCGCAUAGAUACAGUCA--AACUGCCGCAAAGGCAAUCAAGUGUCGCUGAAAACAAAACACACGAAAUAAUGGCAAUGGGGUUGA
(((((((....)))))))...(((((.(((.(((((((...--..))(((.....)))......)))))(((.......................))).))).))))). ( -29.60)
>DroYak_CAF1 66957 107 - 1
UACCUUUUGCGAAGGGUAAGCCGACCUCAUAGACACAUUCA--AACAGCCGCAAAGGCAAUCAAGGGUCGCUGAAAACAAAACACACGAAAUAAUGGCAAUGGGGUUGA
(((((((....)))))))...(((((((((.(...((((..--....(((.....))).........(((.((...........)))))...)))).).))))))))). ( -25.20)
>DroAna_CAF1 40161 106 - 1
UACCCUAAUC-AAGGUAGAGAA-GCCCCACAGACAGACCCACUCACACUCGCACAGGCAAUCAAGUGUCGUUGAAAACAAAACACACGAAA-AAUAUAAAAGGGGUUGG
((((......-..))))....(-(((((......................((....))......((((.(((........)))))))....-.........)))))).. ( -20.10)
>consensus
UACCCUUUGCGAAGGGUGAGACGACCUCAUAGACACAGUCA__AACAGCCGCAAAGGCAAUCAAGUGUCGCUGAAAACAAAACACACGAAAUAAUGGCAAUGGGGUUGA
((((((......))))))...(((((((((.................(((.....)))......((((...((....))..))))..............))))))))). (-19.63 = -20.47 +   0.84)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:42:01 2006