Locus 7242

Sequence ID 3L_DroMel_CAF1
Location 19,396,368 – 19,396,470
Length 102
Max. P 0.506124
window11770

overview

Window 0

Location 19,396,368 – 19,396,470
Length 102
Sequences 6
Columns 105
Reading direction reverse
Mean pairwise identity 80.64
Mean single sequence MFE -23.48
Consensus MFE -15.20
Energy contribution -16.09
Covariance contribution 0.89
Combinations/Pair 1.24
Mean z-score -1.36
Structure conservation index 0.65
SVM decision value -0.05
SVM RNA-class probability 0.506124
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 19396368 102 - 23771897
AUUGACUUGAAUUGAUCCGAGAUGACUUCAUUUGUGGGUCAGUUUGGCCCGUAUUAGAUUUAUCUUUGCCUG-CAA-UUUG-CCAGGUUAAUUUAGCCACCCGGC
((((((((((((((((((((((((....))))).))))))))))..((..(((..(((....))).)))..)-)..-....-.)))))))))...(((....))) ( -28.20)
>DroPse_CAF1 4116 89 - 1
AUUGAUUUGAAUUGAUUUGCAAUGACUUCAUUUGUGGGCCAAC---------------UUCAUCUUUGUCCUCCCACUUUAUACAGGUUCAGUUAUCCGCCCUC-
.........((((((((((.((((....)))).(((((...((---------------.........))...)))))......)))).))))))..........- ( -12.80)
>DroSec_CAF1 35589 93 - 1
AUUGACUUGAAUUGAUCCGAGAUGACUUCAUUUGUGGGUCAGUUGGGCCCAUAUUAGAUUUAUCUUUGCCUG-CAA-UUUG-CCAGGUUAAUUUAG---------
((((((((((((((..(.(((((((..((...((((((((.....))))))))...)).))))))).)....-)))-))..-.)))))))))....--------- ( -26.90)
>DroSim_CAF1 35439 93 - 1
AUUGACUUGAAUUGAUCCGAGAUGACUUCAUUUGUGGGUCAGUUGGGCCCAUAUUAGAUUUAUCUUUGCCUG-CAA-UUUG-CCAGGUUAAUUUAG---------
((((((((((((((..(.(((((((..((...((((((((.....))))))))...)).))))))).)....-)))-))..-.)))))))))....--------- ( -26.90)
>DroEre_CAF1 30466 102 - 1
AUUGACUUGAAUUGAUCCGAGAUGACUUCAUUUGUAGGUCAGCUGGGCCCAUAUUAGAUUUAUCUUCGCCUG-CAA-UUUG-CCAGGUUAAUUUAGCCACCCGGC
((((((((((((((...((((((((..((...(((.((((.....)))).)))...)).))))).)))....-)))-))..-.)))))))))...(((....))) ( -24.30)
>DroYak_CAF1 60910 102 - 1
AUUGACUUGAAUUGAUCCGAGAUGACUUCAUUUGUAGGUCAGCUGGGCCCAUAUUAGAUUUAUCUUCGCCUG-CAA-UUUG-CCAAGUUAAUUUAGCCACCCAGC
((((((((((((((...((((((((..((...(((.((((.....)))).)))...)).))))).)))....-)))-))..-.)))))))))............. ( -21.80)
>consensus
AUUGACUUGAAUUGAUCCGAGAUGACUUCAUUUGUGGGUCAGCUGGGCCCAUAUUAGAUUUAUCUUUGCCUG_CAA_UUUG_CCAGGUUAAUUUAGCCACCC_G_
.((((((((..(((((((((((((....))))).))))))))..((((...................))))............)))))))).............. (-15.20 = -16.09 +   0.89)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:41:53 2006