Locus 7241

Sequence ID 3L_DroMel_CAF1
Location 19,396,094 – 19,396,185
Length 91
Max. P 0.682922
window11769

overview

Window 9

Location 19,396,094 – 19,396,185
Length 91
Sequences 5
Columns 105
Reading direction forward
Mean pairwise identity 78.21
Mean single sequence MFE -21.49
Consensus MFE -7.50
Energy contribution -7.90
Covariance contribution 0.40
Combinations/Pair 1.00
Mean z-score -2.01
Structure conservation index 0.35
SVM decision value 0.31
SVM RNA-class probability 0.682922
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 19396094 91 + 23771897
-CAAUGGA--AAAAAAUUAAAUCCGCCGCAAUUGGAGGGGGAUUCCCAUUUCCCUAAA----------AAAAAAGUCGAGGAUACACGGAAGUUUAAA-AACCGC
-....((.--..........((((.(((....)))((((..((....))..))))...----------...........))))..((....)).....-..)).. ( -17.30)
>DroSec_CAF1 35321 83 + 1
CCAAUGGA--AAAAAAUUAAAUCCGCCGCAAUUGGAGGGGGAUUCCCAUUUGCCUCAA----------ACACACGG----------CGAAAGUUUAAAAAACCCC
........--......((((((.(((((......((((.((((....)))).))))..----------.....)))----------))...))))))........ ( -18.12)
>DroSim_CAF1 35174 81 + 1
-CAAUGGA--AAAAAAUUAAAUCCGCCGCAAUUGGAGGGGGAUUCCCAUUUGCCUCAA----------ACACACGG----------CGGAAGUUUAAA-AGCCGC
-....((.--...(((((...(((((((......((((.((((....)))).))))..----------.....)))----------)))))))))...-..)).. ( -23.32)
>DroEre_CAF1 30193 92 + 1
-CAAUGAACAAAAAAAUUAAAUCCGCCGCAAUUGGAGGGGGACUCCCAUUUCCGUCAUAUACGAGGAUACACACGG----------CGGAAGUUUAAA--ACCGC
-...............((((((((((((....(((..(....)..)))..(((.((......)))))......)))----------))))..))))).--..... ( -24.20)
>DroYak_CAF1 60638 91 + 1
-CAAUGAAGAA-AAAAUUAAAUCCGCCGCAAUUGCAGGGGGACUCCCACUUCCCUCAUAUACGGGAAUACACACGG----------CGGAAGUUUUAA--ACCGC
-..........-((((((...(((((((........(((.....)))..(((((........)))))......)))----------))))))))))..--..... ( -24.50)
>consensus
_CAAUGGA__AAAAAAUUAAAUCCGCCGCAAUUGGAGGGGGAUUCCCAUUUCCCUCAA__________ACACACGG__________CGGAAGUUUAAA_AACCGC
...................(((((.((.........)).)))))..........................................(....)............. ( -7.50 =  -7.90 +   0.40)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:41:52 2006