Sequence ID | 3L_DroMel_CAF1 |
---|---|
Location | 19,393,694 – 19,393,784 |
Length | 90 |
Max. P | 0.541969 |
Location | 19,393,694 – 19,393,784 |
---|---|
Length | 90 |
Sequences | 6 |
Columns | 94 |
Reading direction | reverse |
Mean pairwise identity | 80.09 |
Mean single sequence MFE | -26.05 |
Consensus MFE | -18.58 |
Energy contribution | -18.63 |
Covariance contribution | 0.06 |
Combinations/Pair | 1.24 |
Mean z-score | -1.14 |
Structure conservation index | 0.71 |
SVM decision value | 0.02 |
SVM RNA-class probability | 0.541969 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 19393694 90 - 23771897 AUUAGAGGGACCUAUAAAGA----GGCAGAGAGGGAGGGCAACACGCUGCACGAGUGUGUUCUGCUUGUUAGUUUAACUAGCGCCCAGCAAUUA ......(((..........(----((((((...........(((((((.....))))))))))))))(((((.....))))).)))........ ( -24.60) >DroSec_CAF1 32902 89 - 1 -----AGGGACGGGUACACAGCACGGCAGAAAGGGAGGGCAACACGCUGUACAAGUGUGUUCUGCUUGUUAGUUUAACUAGCGCCCGGCAAUUA -----.....(((((.........(((((((......(....)(((((.....))))).))))))).(((((.....))))))))))....... ( -28.00) >DroSim_CAF1 32769 89 - 1 -----AGGGACGGGUACACAGCACGGCAGAAAGGGAGGGCAACACGCUGCACAAGUGUGUUCUGCUUGUUAGUUUAACUAGCGCCCGGCAAUUA -----.....(((((.........(((((((......(....)(((((.....))))).))))))).(((((.....))))))))))....... ( -28.00) >DroEre_CAF1 27821 87 - 1 -----AGGGACGGGGACACAGC--GGUAGAAAGGGAGGGGAACACGCUGCCCGAGUGUGUUCUGCUUGUUAGUUUAACUAGCGCCCGGCAAUUA -----.....((((........--..........(((.((((((((((.....)))))))))).)))(((((.....))))).))))....... ( -30.20) >DroYak_CAF1 58175 87 - 1 -----AGGGACGGGGACACAGC--AGUAGAAAGAGAGAGGCACACGCUGCACGAGUGUGUUCUGCUUGUUAGUUUAACUAGCGCCCGGCAAUUA -----.(((.((....)...((--(((.(((...((.(((((((((((.....)))))))...)))).))..))).))).))))))........ ( -24.80) >DroAna_CAF1 30828 73 - 1 -----AAGGAUGAU----------GGUU----GGAGGGGCA--GUGGUGCAUGAGUGUGUUCUGCUUGUUAGUUUAACUAGCGCCUGGCAAUUA -----.(((.((.(----------((((----(((..((((--(..(.((((....)))).)..).))))..)))))))).)))))........ ( -20.70) >consensus _____AGGGACGGGUACACAGC__GGCAGAAAGGGAGGGCAACACGCUGCACGAGUGUGUUCUGCUUGUUAGUUUAACUAGCGCCCGGCAAUUA ......(((...............((((((...........(((((((.....))))))))))))).(((((.....))))).)))........ (-18.58 = -18.63 + 0.06)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:41:51 2006