| Sequence ID | 3L_DroMel_CAF1 |
|---|---|
| Location | 19,391,426 – 19,391,518 |
| Length | 92 |
| Max. P | 0.743125 |
| Location | 19,391,426 – 19,391,518 |
|---|---|
| Length | 92 |
| Sequences | 4 |
| Columns | 97 |
| Reading direction | forward |
| Mean pairwise identity | 85.28 |
| Mean single sequence MFE | -15.62 |
| Consensus MFE | -12.74 |
| Energy contribution | -14.05 |
| Covariance contribution | 1.31 |
| Combinations/Pair | 1.11 |
| Mean z-score | -1.68 |
| Structure conservation index | 0.82 |
| SVM decision value | 0.45 |
| SVM RNA-class probability | 0.743125 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 19391426 92 + 23771897 CUAAUUGACGGGGUUUCCGACGAACCCCGACCCACUCUAAAAAAUAAUA-----AAACCCAUGCGCCCAGCCAACCACUGCACUCAAGACAAUUGCU .((((((.((((((((.....))))))))....................-----.......((.(..(((.......)))..).))...)))))).. ( -17.00) >DroSec_CAF1 30812 94 + 1 UUAAUUGAUGGGGUUUCCGACGAACCCCGACCCACUCUACAAAAUA---AAAAAAAACCCAUGCGCCCCGCCACCCACUGCACUCAAGACAAUUGCU .((((((.((((((((.....)))))))).................---.............(((...)))..................)))))).. ( -14.90) >DroEre_CAF1 25511 89 + 1 CUAAUUGACGGGGUUUCCG---AGCCCCGAACCACUCUAAAAAAUAAUA-----AAACUCAUGCGCCCCCUCACCCAGUGCACUCAAGACAAUUGCU .((((((.(((((((....---)))))))....................-----.......(((((...........))))).......)))))).. ( -19.10) >DroYak_CAF1 55910 89 + 1 CUAAUUGACGGGGUUUCCG---AGACCCGACCCACUCUAAAAAAUAAUA-----AAACCCACACGCCCACUCACCCAGUGCACUCAAGACAAUUGCU .((((((...(((((....---.))))).....................-----.............((((.....)))).........)))))).. ( -11.50) >consensus CUAAUUGACGGGGUUUCCG___AACCCCGACCCACUCUAAAAAAUAAUA_____AAACCCAUGCGCCCACCCACCCACUGCACUCAAGACAAUUGCU .((((((.((((((((.....))))))))................................(((((...........))))).......)))))).. (-12.74 = -14.05 + 1.31)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:41:50 2006