Locus 7238

Sequence ID 3L_DroMel_CAF1
Location 19,390,793 – 19,390,901
Length 108
Max. P 0.609559
window11766

overview

Window 6

Location 19,390,793 – 19,390,901
Length 108
Sequences 6
Columns 116
Reading direction reverse
Mean pairwise identity 88.92
Mean single sequence MFE -36.07
Consensus MFE -30.79
Energy contribution -30.77
Covariance contribution -0.02
Combinations/Pair 1.15
Mean z-score -1.61
Structure conservation index 0.85
SVM decision value 0.15
SVM RNA-class probability 0.609559
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 19390793 108 - 23771897
CUUGACGAAAUAUGAGCUCAUGUUCGGGCUUAUGUUCGCCUCGGGUGCG--------AGCGAGAGGGCCCUACUAACAUGCUCUGCUGACACAUCAUAAUUUCUGUCAGUGUAUGG
.............((((....))))((((((...(((((.(((....))--------)))))).))))))......(((((...(((((((.(........).)))))))))))). ( -34.40)
>DroSec_CAF1 30163 108 - 1
CUCGACGAAAUAUGAGCUCAUGUUCGGGCUUAUGUUCGCCUCGGGUGCG--------AGCGAGAGGGCCCUACUAACAUGCUCUGCUGACACAUCAUAAUUUCUGUCAGUGUAUGG
.............((((....))))((((((...(((((.(((....))--------)))))).))))))......(((((...(((((((.(........).)))))))))))). ( -34.40)
>DroSim_CAF1 29326 108 - 1
CUCGACGAAAUAUGAGCUCAUGUUCGGGCUUAUGUUCGCCUCGGGUGCG--------AGCGAGAGGGCCCUACUAACAUGCUCUGCUGACAUAUCAUAAUUUCUGUCAGUGUAUGG
.............((((....))))((((((...(((((.(((....))--------)))))).))))))......(((((...(((((((.(........).)))))))))))). ( -34.40)
>DroEre_CAF1 24790 107 - 1
CUCGACGAAACAUGAGCUCAUGUUUG-GCUUAUGUUCGCCUUGGGUGCG--------AGCGAGAGGUGCUUACUAACAUGCUCUGCUGACACAUCAUAAUUUCUGUCAGUGUAUGG
((((.(.(((((((....))))))).-))...((((((((....).)))--------)))).)))...........(((((...(((((((.(........).)))))))))))). ( -32.00)
>DroYak_CAF1 55150 108 - 1
CUCGACGAAACAUGAGCUCAUGUUUGGGCUUAUGUUGGCCUUGGGAGCG--------AGCGAGAGGUCCUUACUAACAUGCUCUGCUGACACAUCAUAAUUUGUGUCAGUGUAUGG
(((((.(.((((((((((((....))))))))))))..).)))))((.(--------(.(....).))))......(((((...(((((((((........)))))))))))))). ( -42.00)
>DroAna_CAF1 27913 116 - 1
CUCCACAAAAUAUGAGCUCAUGUUCGAGCUUAUGCUUGCUUAGGGUGCGAGGGAGGGAGCGAGAGGGCAGCAUCAACAUGCUACGCUGACACAUCAUAAUUUCUGUCAGUGUAUGC
((((......(((((((((......)))))))))(((((.......)))))))))...((......))(((((....)))))(((((((((.(........).))))))))).... ( -39.20)
>consensus
CUCGACGAAAUAUGAGCUCAUGUUCGGGCUUAUGUUCGCCUCGGGUGCG________AGCGAGAGGGCCCUACUAACAUGCUCUGCUGACACAUCAUAAUUUCUGUCAGUGUAUGG
.....((((.(((((((((......)))))))))))))((((...(((..........))).))))..........(((((...(((((((.(........).)))))))))))). (-30.79 = -30.77 +  -0.02)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:41:49 2006