Locus 7236

Sequence ID 3L_DroMel_CAF1
Location 19,384,789 – 19,384,895
Length 106
Max. P 0.744607
window11761

overview

Window 1

Location 19,384,789 – 19,384,895
Length 106
Sequences 6
Columns 120
Reading direction forward
Mean pairwise identity 80.25
Mean single sequence MFE -30.48
Consensus MFE -14.10
Energy contribution -14.74
Covariance contribution 0.64
Combinations/Pair 1.19
Mean z-score -2.63
Structure conservation index 0.46
SVM decision value 0.46
SVM RNA-class probability 0.744607
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 19384789 106 + 23771897
AGUGAAAACAAAAGGCAUCUUAG---------UGGCCCGGGGA--AUA---UAUUCCUCAAGCGAUUUGCAGUUGAUAAGCGAAUGUCAACUGUAUUUGGAUGGAGUCAAAUGCGCGUAA
.((....)).....((((.....---------(((((((((((--(..---..))))))...(.(..(((((((((((......)))))))))))..).)..)).)))).))))...... ( -32.60)
>DroSec_CAF1 17584 102 + 1
AGUGAA-----AAGGCGUCUUAG---------UGGCC-GGGGAAUAUA---UAUUCCUCAAGCGAUUUGCAGUUGAUAAGCGAAUGUCAACUGAAUUUGAAUGGAGUCAAAUGGAGAUAA
......-----.....(((((..---------(((((-(((((((...---.)))))))...(((....(((((((((......)))))))))...)))....).))))....))))).. ( -27.90)
>DroSim_CAF1 20003 107 + 1
AGUGAAAACAAAAGGCAUCUUAG---------UGGCC-GGGGAAUAUA---UAUUCCUCAAGCGAUUUGCAGUUGAUAAGCGAAUGUCAACUGAAUUUGAAUGGAGUCAAAUGGAGAUAA
.((....)).......(((((..---------(((((-(((((((...---.)))))))...(((....(((((((((......)))))))))...)))....).))))....))))).. ( -29.00)
>DroEre_CAF1 21622 105 + 1
AGUGAAAACAAAAGGCAUCUUAG---------UGGCC-GGGGAA--UA---UAUUCCUCGGGCGAUUUGCAGUUGAUGAGCGAAUGCCAACUGAAUUUGAAUGUAGUCAAAUGGAUACAA
.((....))....(((.......---------((.((-((((((--..---..)))))))).))((((((.........)))))))))......((((((......))))))........ ( -28.30)
>DroYak_CAF1 51970 105 + 1
AGUGAAAACAAAAGGCAUCUCAG---------UGGCC-GGGGAA--UA---UAUUUCUCGAGCGAUUUACAGUUGAUAAGCGAAUGUCAACUGAACUUGGAUGGAGUCAAAAGGAUAUAA
.((....))......(((((.((---------(.(((-((((((--..---..))))))).))......(((((((((......))))))))).))).)))))..(((.....))).... ( -28.90)
>DroAna_CAF1 24836 117 + 1
AGUGAAAGCAAAAAGCUUCUACCCGGCCGGGAUGGCU-GGGGAA--UAGCUUGUAUCUCAGGCGAUUUGCAUUUGAUGAAUGAAUUUCAGCUGCAUUAAGAGCGAGACAAAUGGCUCUAA
((((..(((.....((.....(((((((.....))))-)))(((--(.(((((.....))))).))))))......((((.....))))))).)))).(((((.(......).))))).. ( -36.20)
>consensus
AGUGAAAACAAAAGGCAUCUUAG_________UGGCC_GGGGAA__UA___UAUUCCUCAAGCGAUUUGCAGUUGAUAAGCGAAUGUCAACUGAAUUUGAAUGGAGUCAAAUGGAUAUAA
.((..........(((..................))).((((((.........))))))..))......(((((((((......))))))))).((((((......))))))........ (-14.10 = -14.74 +   0.64)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:41:45 2006