Locus 7235

Sequence ID 3L_DroMel_CAF1
Location 19,384,378 – 19,384,483
Length 105
Max. P 0.963540
window11760

overview

Window 0

Location 19,384,378 – 19,384,483
Length 105
Sequences 5
Columns 116
Reading direction forward
Mean pairwise identity 72.27
Mean single sequence MFE -23.71
Consensus MFE -12.34
Energy contribution -13.26
Covariance contribution 0.92
Combinations/Pair 1.11
Mean z-score -2.07
Structure conservation index 0.52
SVM decision value 1.55
SVM RNA-class probability 0.963540
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 19384378 105 + 23771897
-----------CGAUGUGUGUCCAACUAAGCCACCUUACUAGCUUACCACGUCAGACUCAGCUUCUUGAAGCCUCUCAAUCCGCAUCAAGAUUAAACAGCUAAUGCUGUAGGGGAA
-----------.((((((.((......((((..........))))))))))))...(((....((((((.((..........)).))))))....(((((....))))).)))... ( -25.00)
>DroSec_CAF1 17192 93 + 1
-----------------------GGCUAACGCAGCUUACUAGCUUCCCACGUCAGACUCAGCUUCUUAAAGCCUCCCAAUCUGCAUCAAGAUUAAACAGCUAAUGCUGUAAGGGAA
-----------------------((((...(.((((..((..(.......)..))....)))).)....))))(((((((((......)))))..(((((....)))))..)))). ( -24.40)
>DroSim_CAF1 19586 113 + 1
A---CUGUAUGUCAUGUGUGCCCAACUAACGCAGCUUACUAGCUUCCCACGUCAGACUCAGCUUCUUAAAGCCUCCCAAUCUGCAUCAAGAUUAAACAGCUAAUGCUGUAAGGGAA
.---(((.((((..(((((.........)))))(((....))).....))))))).....((((....)))).(((((((((......)))))..(((((....)))))..)))). ( -29.00)
>DroEre_CAF1 21219 110 + 1
A---UUUUAAGACAUGUGGG-CCACCUAAUCCACCUAACCAGUUUACCACGUGAGAUACAGCUUUUUAAAGCCUCCAAAUCCGCAUCAGGAUUAAACAGCUAAUGCUGU--AGGAA
.---........(((((((.-.........................))))))).......((((....)))).(((.(((((......)))))..(((((....)))))--.))). ( -26.17)
>DroYak_CAF1 51571 106 + 1
UCACUUUUUAGUCAUU----------UCACCUACCCAACUAUCUUACCAUAUCAGAUUCAGCUUUUUAAAGCCUCCAAAUCUGCAUCGCGAUUAAACAGCUAAAGCUGUUAAAAAA
........(((((...----------.............(((......))).((((((..((((....)))).....))))))......)))))((((((....))))))...... ( -14.00)
>consensus
_____U_U__GUCAUGUG_G_CCAACUAACCCACCUUACUAGCUUACCACGUCAGACUCAGCUUCUUAAAGCCUCCCAAUCUGCAUCAAGAUUAAACAGCUAAUGCUGUAAGGGAA
............................................................((((....)))).(((((((((......)))))..(((((....)))))..)))). (-12.34 = -13.26 +   0.92)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:41:44 2006