Locus 7234

Sequence ID 3L_DroMel_CAF1
Location 19,383,514 – 19,383,609
Length 95
Max. P 0.649077
window11759

overview

Window 9

Location 19,383,514 – 19,383,609
Length 95
Sequences 6
Columns 114
Reading direction reverse
Mean pairwise identity 76.43
Mean single sequence MFE -14.05
Consensus MFE -8.33
Energy contribution -8.83
Covariance contribution 0.50
Combinations/Pair 1.00
Mean z-score -1.51
Structure conservation index 0.59
SVM decision value 0.24
SVM RNA-class probability 0.649077
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 19383514 95 - 23771897
UAAACUAUAUCUUAUAGAU-UCAUUUGAAACAUG-----------------UAUA-UUUCUCCGUGGCCUCUUCUCUACUUUUAACUCCCUGCCACGGCACUUAGCCAACGCCA
....(((((...))))).(-((....))).....-----------------....-.......(((((.......................)))))(((.....)))....... ( -12.30)
>DroSec_CAF1 16445 90 - 1
-----UAUAUCUUAUAGAU-UCAUUUGAAACAUG-----------------UAUA-UUUCUCAGUGGCCUCUUCUCUACUUUCAACUCCCUGCCACGGCACUUAGCCAACUCCA
-----.......((((..(-((....)))...))-----------------))..-.......(((((.......................)))))(((.....)))....... ( -11.80)
>DroSim_CAF1 18741 90 - 1
-----UAUAUCUUAUAGAU-UCAUUUGAAACAUG-----------------UUUA-UUUCUCCGUGGCCUCUUCUCUACUUUCAACUCCCUGCGACGGCACUUAGCCAACGCCA
-----.........(((((-((....))).((((-----------------....-......))))........)))).............(((..(((.....)))..))).. ( -11.60)
>DroEre_CAF1 20328 95 - 1
UCUUUUAUAUUUGAAAUAU-UCAUUUUACACAUG-----------------AAUA-UUUCUCCGUGGCCUCUUCUCUACUUUCAACUCCCUGCCACGGCACUUAGCCAACGCCA
............(((((((-((((.......)))-----------------))))-))))...(((((.......................)))))(((.....)))....... ( -20.60)
>DroYak_CAF1 50723 95 - 1
UUUU-UUUAUCUGAAAUAU-UAAUUUUAAACGUG-----------------AAUUUUUUCUCCGUGGCCUCUUCUCCACUUUUAACUCCCUGCCACGGCACUUAGCCAACGCCA
....-......((((((..-..))))))...(((-----------------............(((((.......................)))))(((.....)))..))).. ( -13.50)
>DroAna_CAF1 23053 106 - 1
-----GAUGUUUAAUAGAUAGCAGUUGAAACUUUAAUAAACUAUAUAAGUUGAUUUUCUCUACGUG---UAUGCUUUGGUCCUAACUCCCUGCCACGGCACUUAGCCAACGCCA
-----(.((((.........((((..((........((((.((((((.((.((.....)).)).))---)))).))))........)).))))...(((.....))))))).). ( -14.49)
>consensus
_____UAUAUCUUAUAGAU_UCAUUUGAAACAUG_________________UAUA_UUUCUCCGUGGCCUCUUCUCUACUUUCAACUCCCUGCCACGGCACUUAGCCAACGCCA
...............................................................(((((.......................)))))(((.....)))....... ( -8.33 =  -8.83 +   0.50)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:41:43 2006