| Sequence ID | 3L_DroMel_CAF1 |
|---|---|
| Location | 19,383,052 – 19,383,145 |
| Length | 93 |
| Max. P | 0.886306 |
| Location | 19,383,052 – 19,383,145 |
|---|---|
| Length | 93 |
| Sequences | 6 |
| Columns | 102 |
| Reading direction | reverse |
| Mean pairwise identity | 78.66 |
| Mean single sequence MFE | -30.87 |
| Consensus MFE | -17.74 |
| Energy contribution | -18.35 |
| Covariance contribution | 0.61 |
| Combinations/Pair | 1.11 |
| Mean z-score | -2.16 |
| Structure conservation index | 0.57 |
| SVM decision value | 0.94 |
| SVM RNA-class probability | 0.886306 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 19383052 93 - 23771897 C-CAGCCUCUUUUGGCUUUCGGGGCU-GCCAGCCAUCUGGGUUGGAAAAGCAAAGGAAAGUGGAAA-------GUGGAAACGAGUAAGCGAUGAGAAAGGGG (-(..((.(((((.((((((...(((-.((((((.....))))))...)))....)))))).))))-------).))...((......))........)).. ( -31.40) >DroSec_CAF1 15985 94 - 1 CCCAGCCUCUUUUGGCUUUCGGGGCU-GCCAGCCAUCUGGGUUGGAAAAGCAAAGGAAAGUGGAAA-------GUGGAAACGAGUGGGCGUGGAGGAGAGGG .((((((((((((.((((((...(((-.((((((.....))))))...)))....)))))).))))-------)((....))...)))).)))......... ( -36.20) >DroSim_CAF1 18280 94 - 1 CCCAGCCUCUUUUGGCUUUCGGGGCU-CCCAGCCAUCUGGGUUGGAAAAGCAAAGGAAAGUGGAAA-------GUGGAAACGAGUGAGCGCGGAGAAAGGGG (((..((.(((((.((((((...(((-.((((((.....))))))...)))....)))))).))))-------).))...((.(....).))......))). ( -33.50) >DroEre_CAF1 19880 85 - 1 CCCAGCCUCUUUUGGCUUUUGGGGCU-GCCAGCCAUCUGGGUUGGAAAAGCAAAGGAAAGUGGAAA-------UGGGAAA-------GCGAGGGAAAG--GG (((.(((((((((.((((((...(((-.((((((.....))))))...)))....)))))).))))-------.)))...-------))..)))....--.. ( -29.60) >DroYak_CAF1 50263 87 - 1 CCCAGCUUUUUUUGGCUUUUGGGGCU-GCCAGCCAUCUGGGUUGGAAAAGCAAAGGAAAGUGGCAA-------UGGGAAA-------GCGAUGGCAAGGGGG (((.(((((((((.((((((...(((-.((((((.....))))))...)))....)))))).)...-------.))))))-------))(....)..))).. ( -27.50) >DroAna_CAF1 22523 100 - 1 CCUAGACUCUUUGUGCUUUUGGGCCAAACCAGCCAUCUGGGUUGGAAAGGCAAAGAAAAGUGGUCAUACAGCGGUGGAGAGGGGAUUGAAUGGA--GGGGGG (((...(((((..((((....((((...((((((.....))))))....((........))))))....))).)..))))))))..........--...... ( -27.00) >consensus CCCAGCCUCUUUUGGCUUUCGGGGCU_GCCAGCCAUCUGGGUUGGAAAAGCAAAGGAAAGUGGAAA_______GUGGAAACGAGU__GCGAGGAGAAGGGGG .........((((.((((((...(((..((((((.....))))))...)))....)))))).)))).................................... (-17.74 = -18.35 + 0.61)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:41:42 2006