Sequence ID | 3L_DroMel_CAF1 |
---|---|
Location | 19,381,671 – 19,381,772 |
Length | 101 |
Max. P | 0.742796 |
Location | 19,381,671 – 19,381,772 |
---|---|
Length | 101 |
Sequences | 6 |
Columns | 101 |
Reading direction | forward |
Mean pairwise identity | 96.37 |
Mean single sequence MFE | -27.10 |
Consensus MFE | -24.70 |
Energy contribution | -24.32 |
Covariance contribution | -0.39 |
Combinations/Pair | 1.14 |
Mean z-score | -1.18 |
Structure conservation index | 0.91 |
SVM decision value | 0.45 |
SVM RNA-class probability | 0.742796 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 19381671 101 + 23771897 AAGACUUUUUGAGUGGACUGCAGCACUCUGCAGAGGUUAAACACUAACCUGAUGAUGCCAAGCACAGCCGCACAACAGCAAGAAAUGUGGAGAGGACUCCA ........(((.((((.((((((....))))))((((((.....))))))..((.(((...))))).)))).)))............(((((....))))) ( -25.90) >DroSec_CAF1 14530 101 + 1 AAGACUUUUUGAGUGGACUGCAGCACUCUGCAGAGGUUAAACACUAACCUGAUGAUGCCAAGCACAGCCGCACAACAGCAAGAAAUGUGGAGAGGACUCCA ........(((.((((.((((((....))))))((((((.....))))))..((.(((...))))).)))).)))............(((((....))))) ( -25.90) >DroSim_CAF1 16895 101 + 1 AAGACUUUUUGAGUGGACUGCAGCACUCUGCAGAGGUUAAACACUAACCUGAUGAUGCCAAGCACAGCCGCACAACAGCAAGAAAUGUGGAGAGGACUCCA ........(((.((((.((((((....))))))((((((.....))))))..((.(((...))))).)))).)))............(((((....))))) ( -25.90) >DroEre_CAF1 18464 101 + 1 AAGACUUUUUGAGUGGACUGCAGCACUCUGCAGAGGUUAAACACUAACCUGAUGAUGCCAAGCACAGCCGCACAACAGCAAGAAAUGUGGAGAGGACUCCA ........(((.((((.((((((....))))))((((((.....))))))..((.(((...))))).)))).)))............(((((....))))) ( -25.90) >DroYak_CAF1 48827 101 + 1 AAGACUUUUUGAGUGGACUGCAGCACUCUGCAGAGGUUAAACACUAACCUGAUGAUGCCAAGCACAGCCGCACAACAGCAAGAAAUGUGGAGAGGACUCCA ........(((.((((.((((((....))))))((((((.....))))))..((.(((...))))).)))).)))............(((((....))))) ( -25.90) >DroAna_CAF1 21295 101 + 1 AAGACUUUUUGAGUGGACUGCAGUACUCUGCAGAGGUUAAACACUAACCUGCUGAUGCCAAGCACAGCGGCACAACGGCUAGGAAUUUGGAGAGGUCUUUG ((((((((((.((....((((((....))))))((((((.....))))))((((.(((...)))))))(((......)))......)).)))))))))).. ( -33.10) >consensus AAGACUUUUUGAGUGGACUGCAGCACUCUGCAGAGGUUAAACACUAACCUGAUGAUGCCAAGCACAGCCGCACAACAGCAAGAAAUGUGGAGAGGACUCCA ....(((.(((..(((.((((((....))))))((((((.....)))))).......))).((......))....))).))).....(((((....))))) (-24.70 = -24.32 + -0.39)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:41:41 2006