| Sequence ID | 3L_DroMel_CAF1 |
|---|---|
| Location | 19,381,428 – 19,381,539 |
| Length | 111 |
| Max. P | 0.718686 |
| Location | 19,381,428 – 19,381,539 |
|---|---|
| Length | 111 |
| Sequences | 5 |
| Columns | 113 |
| Reading direction | forward |
| Mean pairwise identity | 87.30 |
| Mean single sequence MFE | -31.42 |
| Consensus MFE | -21.40 |
| Energy contribution | -22.92 |
| Covariance contribution | 1.52 |
| Combinations/Pair | 1.11 |
| Mean z-score | -2.21 |
| Structure conservation index | 0.68 |
| SVM decision value | 0.39 |
| SVM RNA-class probability | 0.718686 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 19381428 111 + 23771897 A-AACAUGGUCACAAAAGGCAACUUAACCCGUUAACGCGUUAAAGAGCA-AGCCGAGUGGCUAAAAGCUAUGCCGAGCAGCGACUACGGCUAUUAUGAUGCUGGAGAUUAUGA .-..(((((((.(....((((..(((((.((....)).)))))......-((((((((.(((....(((......)))))).))).))))).......)))).).))))))). ( -33.10) >DroSim_CAF1 16652 111 + 1 A-AACAUGGUCACAAAAGGCAACUUAACCCGUUAACGCGUUAAAGAGCA-AGCCGAGUGGCUAAAAGCUAUGCCGAGCAGCGACUACGGCGAUUAUGAUGCUGGAGAUUAUGA .-..(((((((.(....((((..(((((.((....)).)))))......-.(((((((.(((....(((......)))))).))).))))........)))).).))))))). ( -32.40) >DroEre_CAF1 18233 111 + 1 A-AACACGCUCACAAAAGGCAACUUAACCCGUUAACGCGUUAAAGAGCA-AGCCGAGUGGCUAAAAGCUAUGCCGAGCAGCGAAUACGGCGAUUAUGAGGCUGCAGAUUAUGA .-.....((((......(....)(((((.((....)).))))).)))).-((((..(((((.....)))))((((...........))))........))))........... ( -28.20) >DroYak_CAF1 48584 111 + 1 A-AACAUGGUCACAAAAGGCAACUUAACCCGUUAACGCGUUAAAGAGCA-AGCCGAGUGGCUAAAAGCUAUGCCGAGCAGCGACUACGGCGAUUAUGAGGCUGCAGAUUAUGA .-..(((((((......(....)(((((.((....)).)))))...(((-.(((..(((((.....)))))((((((......)).))))........)))))).))))))). ( -33.00) >DroAna_CAF1 21056 97 + 1 AAAACAUCGUCACAAAAGGCAACUUAACCCGUUAAGGCGUUAAAGAGCCUGGCCGAGUGGUUAAAAGCUAUG----------ACUGCCGUGAUGAUAAU------GAUUAUGG .....((((((((...((((...(((((((.....)).)))))...))))(((.(.(((((.....))))).----------.).)))))))))))...------........ ( -30.40) >consensus A_AACAUGGUCACAAAAGGCAACUUAACCCGUUAACGCGUUAAAGAGCA_AGCCGAGUGGCUAAAAGCUAUGCCGAGCAGCGACUACGGCGAUUAUGAUGCUGCAGAUUAUGA ....(((((((....(((....)))...((((...((((((....(((..((((....))))....)))......))).)))...))))................))))))). (-21.40 = -22.92 + 1.52)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:41:40 2006