Locus 723

Sequence ID 3L_DroMel_CAF1
Location 2,199,801 – 2,199,894
Length 93
Max. P 0.940341
window1110

overview

Window 0

Location 2,199,801 – 2,199,894
Length 93
Sequences 6
Columns 101
Reading direction forward
Mean pairwise identity 75.94
Mean single sequence MFE -23.33
Consensus MFE -11.83
Energy contribution -11.50
Covariance contribution -0.33
Combinations/Pair 1.27
Mean z-score -2.26
Structure conservation index 0.51
SVM decision value 1.31
SVM RNA-class probability 0.940341
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 2199801 93 + 23771897
UACA-AUUAAUGCUGAAAUACAGUUGCA-----AUAAAAUUGUAUUUCCUCCACGGGGACUC-CCCGCCGACUUCAAACAAUCGC-AAAGCUUGAUUGAAG
..((-(((((.((((((((((((((...-----....))))))))))).((..(((((...)-))))..))..............-..))))))))))... ( -26.50)
>DroPse_CAF1 296999 92 + 1
GAAU----A-----AAAAUACAGUUGCAGAGCCAUGAAAUUGCAUUUUCCUUUUGGGUUCACAUCCACUGACAACAAACAAUGGCCAAAGCCUGAUUGAAA
....----.-----........(((((((......((((......))))....(((((....)))))))).))))...(((((((....)))..))))... ( -16.10)
>DroSim_CAF1 252305 93 + 1
GACA-AUUAAUGCUGAAAUACAGUUGCA-----AUAAAAUUGUAUUUCCUGCGCGGGGACUC-CCCGCCGACUUCAAACAAUCGC-AGAGCUUGAUUGAAG
..((-(((((.((((((((((((((...-----....)))))))))))((((((((((...)-))))).(....)........))-))))))))))))... ( -34.80)
>DroEre_CAF1 257160 94 + 1
GACAAAUUAAUGCUGAAAUACAGUUGCA-----AUAAAAUUGUAUUUCCUUUGCGGGGACUC-AUCGUCGACGUCAAACAAUGGC-AAAGCUUGAUUGAAG
....((((((.((((((((((((((...-----....))))))))))).((((((..(((..-...)))..)).)))).......-..))))))))).... ( -22.80)
>DroYak_CAF1 250850 93 + 1
GACAAAUUAAUGCUGAAAUACAGUUGCA-----AUAAAAUUGUAUUUCCUUUGAGGGG-CUC-CCUGCCGGCGUCAAACAAUGGC-AAAGCUUGAUUGAAG
....((((((.((((((((((((((...-----....))))))))))).....((((.-..)-)))((((..(.....)..))))-..))))))))).... ( -23.70)
>DroPer_CAF1 275312 92 + 1
GAAU----A-----AAAAUACAGUUGCAGAGCCAUGAAAUUGCAUUUUCCUUUUGGGUUCACAUCCACUGACAACAAACAAUGGCCAAAGCCUGAUUGAAA
....----.-----........(((((((......((((......))))....(((((....)))))))).))))...(((((((....)))..))))... ( -16.10)
>consensus
GACA_AUUAAUGCUGAAAUACAGUUGCA_____AUAAAAUUGUAUUUCCUUUGCGGGGACUC_CCCGCCGACAUCAAACAAUGGC_AAAGCUUGAUUGAAG
..............(((((((((((............))))))))))).....((((......))))...........(((((((....)))..))))... (-11.83 = -11.50 +  -0.33) 

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript


Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:49:30 2006