Sequence ID | 3L_DroMel_CAF1 |
---|---|
Location | 2,199,801 – 2,199,894 |
Length | 93 |
Max. P | 0.940341 |
Location | 2,199,801 – 2,199,894 |
---|---|
Length | 93 |
Sequences | 6 |
Columns | 101 |
Reading direction | forward |
Mean pairwise identity | 75.94 |
Mean single sequence MFE | -23.33 |
Consensus MFE | -11.83 |
Energy contribution | -11.50 |
Covariance contribution | -0.33 |
Combinations/Pair | 1.27 |
Mean z-score | -2.26 |
Structure conservation index | 0.51 |
SVM decision value | 1.31 |
SVM RNA-class probability | 0.940341 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 2199801 93 + 23771897 UACA-AUUAAUGCUGAAAUACAGUUGCA-----AUAAAAUUGUAUUUCCUCCACGGGGACUC-CCCGCCGACUUCAAACAAUCGC-AAAGCUUGAUUGAAG ..((-(((((.((((((((((((((...-----....))))))))))).((..(((((...)-))))..))..............-..))))))))))... ( -26.50) >DroPse_CAF1 296999 92 + 1 GAAU----A-----AAAAUACAGUUGCAGAGCCAUGAAAUUGCAUUUUCCUUUUGGGUUCACAUCCACUGACAACAAACAAUGGCCAAAGCCUGAUUGAAA ....----.-----........(((((((......((((......))))....(((((....)))))))).))))...(((((((....)))..))))... ( -16.10) >DroSim_CAF1 252305 93 + 1 GACA-AUUAAUGCUGAAAUACAGUUGCA-----AUAAAAUUGUAUUUCCUGCGCGGGGACUC-CCCGCCGACUUCAAACAAUCGC-AGAGCUUGAUUGAAG ..((-(((((.((((((((((((((...-----....)))))))))))((((((((((...)-))))).(....)........))-))))))))))))... ( -34.80) >DroEre_CAF1 257160 94 + 1 GACAAAUUAAUGCUGAAAUACAGUUGCA-----AUAAAAUUGUAUUUCCUUUGCGGGGACUC-AUCGUCGACGUCAAACAAUGGC-AAAGCUUGAUUGAAG ....((((((.((((((((((((((...-----....))))))))))).((((((..(((..-...)))..)).)))).......-..))))))))).... ( -22.80) >DroYak_CAF1 250850 93 + 1 GACAAAUUAAUGCUGAAAUACAGUUGCA-----AUAAAAUUGUAUUUCCUUUGAGGGG-CUC-CCUGCCGGCGUCAAACAAUGGC-AAAGCUUGAUUGAAG ....((((((.((((((((((((((...-----....))))))))))).....((((.-..)-)))((((..(.....)..))))-..))))))))).... ( -23.70) >DroPer_CAF1 275312 92 + 1 GAAU----A-----AAAAUACAGUUGCAGAGCCAUGAAAUUGCAUUUUCCUUUUGGGUUCACAUCCACUGACAACAAACAAUGGCCAAAGCCUGAUUGAAA ....----.-----........(((((((......((((......))))....(((((....)))))))).))))...(((((((....)))..))))... ( -16.10) >consensus GACA_AUUAAUGCUGAAAUACAGUUGCA_____AUAAAAUUGUAUUUCCUUUGCGGGGACUC_CCCGCCGACAUCAAACAAUGGC_AAAGCUUGAUUGAAG ..............(((((((((((............))))))))))).....((((......))))...........(((((((....)))..))))... (-11.83 = -11.50 + -0.33)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:49:30 2006