Locus 7229

Sequence ID 3L_DroMel_CAF1
Location 19,377,309 – 19,377,401
Length 92
Max. P 0.624440
window11753

overview

Window 3

Location 19,377,309 – 19,377,401
Length 92
Sequences 5
Columns 105
Reading direction reverse
Mean pairwise identity 75.86
Mean single sequence MFE -22.66
Consensus MFE -14.71
Energy contribution -14.71
Covariance contribution -0.00
Combinations/Pair 1.20
Mean z-score -1.50
Structure conservation index 0.65
SVM decision value 0.19
SVM RNA-class probability 0.624440
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 19377309 92 - 23771897
GAACAAUCCUUAAGGCGGCUACAAAGAAUUGUCUGCAGGCAGCCUCUUGUCGCUGGAUUCGUAC--UUGUACUCUUUCUUUUAGGACUACA-----------AAC
..(((((((....((((((....((((.(((((....)))))..))))))))))))))).))..--(((((.((((......)))).))))-----------).. ( -23.10)
>DroSec_CAF1 10202 83 - 1
AAACAAUCCUUAAGGCGGCUACAAAGAAAA-----------GUCUCCUGCCGCUGGAUUUGUACUCUUGUACUCUUUCUUUUAGGACUACA-----------AAC
..(((((((....((((((.....(((...-----------.)))...))))))))).))))....(((((.((((......)))).))))-----------).. ( -20.80)
>DroSim_CAF1 7575 80 - 1
A-ACAAUCCUUAAGGCGGCUACAAAGAAAA-----------GUCUCCUGCCGCUGGAUUUGUAC--UUGUACUCUUUCUUUUAGGACUACA-----------AAC
.-(((((((....((((((.....(((...-----------.)))...))))))))).))))..--(((((.((((......)))).))))-----------).. ( -20.80)
>DroEre_CAF1 14031 84 - 1
GAGCAAACCUUAGGGCGGCUC-AAAGAAAAGUCUGCAGGCAGCCUCUUGUCGCUGGAUUUGUAC--UUGUACUCCUUCCUAUAGGAC------------------
.......((((((((.((...-.(((..((((((((.(((((....))))))).))))))...)--)).....)).))))).)))..------------------ ( -21.40)
>DroYak_CAF1 44416 103 - 1
GAGCAAUCCUUAAGGCGGCUCCAAAGAAAAGUCUGCAGGCCGCCUCUUGUCGCUGGAUUUGUAC--UAGUACUCUUUCUUUUGGGACUACAGACCGUGUAUCAAC
((....))....((((((((....(((....)))...)))))))).(((.(((.((.(((((..--.(((.(((........))))))))))))))))...))). ( -27.20)
>consensus
GAACAAUCCUUAAGGCGGCUACAAAGAAAAGUCUGCAGGC_GCCUCUUGUCGCUGGAUUUGUAC__UUGUACUCUUUCUUUUAGGACUACA___________AAC
..(((((((....((((((.............................))))))))))).))......(((.((((......)))).)))............... (-14.71 = -14.71 +  -0.00)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:41:37 2006