Locus 7226

Sequence ID 3L_DroMel_CAF1
Location 19,374,757 – 19,374,867
Length 110
Max. P 0.621095
window11748

overview

Window 8

Location 19,374,757 – 19,374,867
Length 110
Sequences 4
Columns 113
Reading direction forward
Mean pairwise identity 94.23
Mean single sequence MFE -23.40
Consensus MFE -18.20
Energy contribution -19.95
Covariance contribution 1.75
Combinations/Pair 1.06
Mean z-score -2.13
Structure conservation index 0.78
SVM decision value 0.18
SVM RNA-class probability 0.621095
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 19374757 110 + 23771897
GGCAUGAAAAUUUAAUUGGAGUAAAAAGCUGGUGCACAACUCUCAAAAACUAGUUAGAGGGGGCCAAAGCGAAAAUGGAAAGCGCAGAA---AAAAGCGAGAAAUCGCCAGGA
(((.......((((((((((((.....)))(((.....)))........)))))))))....)))...(((....(....).)))....---....((((....))))..... ( -21.90)
>DroSec_CAF1 7706 113 + 1
GGCAUGAAAAUUUAAUUGGAGUAAAAUGCUGCUGCACAACUCUCAAAAACUAGUUAGAGGGGGCCAAAGCGAAAAUGGAAAGCGCAGGAAAAAAAAGCGAGAAAUCGCCAGGA
(((.............((.((((......)))).))...(((((............))))).)))...(((....(....).)))...........((((....))))..... ( -24.10)
>DroEre_CAF1 11536 109 + 1
GGCAUGAAAAUUUAAUUGGAGUAAAAUGCUGCUGCACAACUCUCAAAAACUAGUUAGAGAGGGCAAAAGCGAAAAUGGAAAGCGCAGAAA----AAGCGAGAAAUCGCCAGGA
(((........................(((.((((.(..(((((............))))).((....))...........).))))...----.)))((....))))).... ( -25.00)
>DroYak_CAF1 40648 113 + 1
GGCAUGAAAAUUUAAUUGGAGUAAAAUGCUGUUGCACAACUCUCAAAAACUAGUUAGAGAGGGCAAAAGCGAAAAUGGAAAGCGCAGAAAAAAAAAACGAGAAAUCGCCAGGA
(((.......................((((.((((....(((((............))))).)))).))))...........................((....))))).... ( -22.60)
>consensus
GGCAUGAAAAUUUAAUUGGAGUAAAAUGCUGCUGCACAACUCUCAAAAACUAGUUAGAGAGGGCAAAAGCGAAAAUGGAAAGCGCAGAAA__AAAAGCGAGAAAUCGCCAGGA
(((.........................(((.(((....(((((............))))).((....))...........))))))...........((....))))).... (-18.20 = -19.95 +   1.75)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:41:32 2006