Locus 7225

Sequence ID 3L_DroMel_CAF1
Location 19,374,317 – 19,374,428
Length 111
Max. P 0.745790
window11747

overview

Window 7

Location 19,374,317 – 19,374,428
Length 111
Sequences 6
Columns 120
Reading direction forward
Mean pairwise identity 96.78
Mean single sequence MFE -29.79
Consensus MFE -27.83
Energy contribution -27.99
Covariance contribution 0.17
Combinations/Pair 1.00
Mean z-score -1.03
Structure conservation index 0.93
SVM decision value 0.46
SVM RNA-class probability 0.745790
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 19374317 111 + 23771897
GCAAACACAAUUCGGAAAUGACCCAAAAAUGCUUAAAUCUCAAUAAAAGGGCAUUUUGACUUGAACUGUCAGUC--------GGUGAGUGAGGCGAAGGGUU-UUCUGGGUCGAUGUGUC
....(((((((((((((..(((((.(((((((((..............)))))))))..((((.((((.....)--------)))...)))).....)))))-))))))))...))))). ( -28.74)
>DroSec_CAF1 7284 111 + 1
GCAAACACAAUUCGGAAAUGACCCAAAAAUGCUUAAAUCUCAAUAAAAGGGCAUUUUGACUUGAACUGUCAGUC--------GGUGAGUGAGGCGAAGGGUU-UUCUGGGUCGAUGUGUC
....(((((((((((((..(((((.(((((((((..............)))))))))..((((.((((.....)--------)))...)))).....)))))-))))))))...))))). ( -28.74)
>DroSim_CAF1 4693 111 + 1
GCAAACACAAUUCGGAAAUGACCCAAAAAUGCUUAAAUCUCAAUAAAAGGGCAUUUUGACUUGAACUGUCAGUC--------GGUGAGUGAGGCGAAGGGUU-UUCUGGGUCGAUGUGUC
....(((((((((((((..(((((.(((((((((..............)))))))))..((((.((((.....)--------)))...)))).....)))))-))))))))...))))). ( -28.74)
>DroEre_CAF1 11113 111 + 1
GCAAACACAAUUCGGAAAUGACCCAAAAAUGCUUAAAUCUCAAUAAAAGGGCAUUUUGACUUGAACUGUCAGUC--------GGUGAGUGAGGCGAAGGGUU-UUCUGGGUCGAUGUGUC
....(((((((((((((..(((((.(((((((((..............)))))))))..((((.((((.....)--------)))...)))).....)))))-))))))))...))))). ( -28.74)
>DroYak_CAF1 40212 111 + 1
GCAAACACAAUUCGGAAAUGACCCAAAAAUGCUUAAAUCUCAAUAAAAGGGCAUUUUGACUUGAACUGUCAGUC--------GGUGAGUGAGGCGAAGGGUU-UUCUGGGUCGAUGUGUC
....(((((((((((((..(((((.(((((((((..............)))))))))..((((.((((.....)--------)))...)))).....)))))-))))))))...))))). ( -28.74)
>DroAna_CAF1 14093 119 + 1
GCAAACACAAUUCGGAAAUGACCCAAAAAUGCUUAAAUCUCAAUAAAAGGGCAUUUUGACUUGAACUGUCAGUCAGUCAGUCGGUGAGU-CGGCGAAGGGUUUUUCUGGGUCGAUGUGUC
....((((((((((((((.(((((.(((((((((..............)))))))))((((((.((((.(.....).))))...)))))-)......))))))))))))))...))))). ( -35.04)
>consensus
GCAAACACAAUUCGGAAAUGACCCAAAAAUGCUUAAAUCUCAAUAAAAGGGCAUUUUGACUUGAACUGUCAGUC________GGUGAGUGAGGCGAAGGGUU_UUCUGGGUCGAUGUGUC
....((((((((((((...(((((.....(((((....((((.............(((((.......)))))............))))..)))))..)))))..)))))))...))))). (-27.83 = -27.99 +   0.17)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:41:31 2006