| Sequence ID | 3L_DroMel_CAF1 |
|---|---|
| Location | 19,368,926 – 19,369,046 |
| Length | 120 |
| Max. P | 0.609086 |
| Location | 19,368,926 – 19,369,046 |
|---|---|
| Length | 120 |
| Sequences | 3 |
| Columns | 120 |
| Reading direction | forward |
| Mean pairwise identity | 91.04 |
| Mean single sequence MFE | -31.67 |
| Consensus MFE | -23.24 |
| Energy contribution | -25.47 |
| Covariance contribution | 2.23 |
| Combinations/Pair | 1.06 |
| Mean z-score | -2.57 |
| Structure conservation index | 0.73 |
| SVM decision value | 0.15 |
| SVM RNA-class probability | 0.609086 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 19368926 120 + 23771897 GCAAGGGAAAACGGCACAGCAGAGCAGAAGCUAGAAAUAGCAUUCUAUAGCACCACGAAAAUGUGCUAAUUUGUUUAGUCAGCGCCACUUUCCACUGCACUACUAAUGCUGACAAAUAAC (((..(((((..(((.(.((.(((((((.((((....))))......((((((.........)))))).))))))).))..).)))..)))))..)))...................... ( -33.90) >DroSim_CAF1 14629 117 + 1 GCAAGGGAGAACGGCACAGCCCAGCAGAAGCUAGAAAUAGCAUUCUAUAGCAACACGAAAAUGUGCUAAUUUGUUUAGUCAGCGCCACUUUCCACUGCAC---UAAUGCUGACAAAUAAC (((..(((((..(((.(.((..((((((.((((....))))......(((((.((......))))))).))))))..))..).)))..)))))..)))..---................. ( -30.50) >DroYak_CAF1 18242 117 + 1 GCAAGGGAAAACGGCACUGUAGAGCAGAAACUAGCAAAAGCAUUCUAUAGCAACAUGAAAAUGUGCUAAUUUGUUUAGUCAGCGCCACUUUCAACUGCAC---UAAUGCUGGGAAAUAAC (((...((((..(((.(((..(((((((.....((....))......(((((.(((....)))))))).)))))))...))).)))..))))...)))..---................. ( -30.60) >consensus GCAAGGGAAAACGGCACAGCAGAGCAGAAGCUAGAAAUAGCAUUCUAUAGCAACACGAAAAUGUGCUAAUUUGUUUAGUCAGCGCCACUUUCCACUGCAC___UAAUGCUGACAAAUAAC (((..(((((..(((.(.((.(((((((.((((....))))......(((((.((......))))))).))))))).).).).)))..)))))..)))...................... (-23.24 = -25.47 + 2.23)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:41:30 2006