| Sequence ID | 3L_DroMel_CAF1 |
|---|---|
| Location | 19,359,700 – 19,359,810 |
| Length | 110 |
| Max. P | 0.973969 |
| Location | 19,359,700 – 19,359,810 |
|---|---|
| Length | 110 |
| Sequences | 3 |
| Columns | 120 |
| Reading direction | reverse |
| Mean pairwise identity | 92.22 |
| Mean single sequence MFE | -43.03 |
| Consensus MFE | -40.35 |
| Energy contribution | -40.80 |
| Covariance contribution | 0.45 |
| Combinations/Pair | 1.03 |
| Mean z-score | -2.62 |
| Structure conservation index | 0.94 |
| SVM decision value | 1.72 |
| SVM RNA-class probability | 0.973969 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 19359700 110 - 23771897 CAC----AC------ACAGGACAAGAGCAUUUGGCAUUUUAUGCGAAAUGUUUCCCCGGCGAAGGAGCCGUCGGGAUUCGGCAUUAUAGUUGUAUGAGAUGCCGGCCCUUCUUCUGUUAC ...----..------((((((.(((.((....((((((((((((((((((((((((((((......))))..))))...))))))....)))))))))))))).)).))).))))))... ( -43.10) >DroSec_CAF1 9500 120 - 1 CACAUGCACAUGAAGGCAGGACAAGAGCAUUUGGCAUUUUAUGCGAAAUGUUUCCCCGGCGAAGGAGCCGUCGGGAUUCGGCAUUAUAGUUGUAUGAGAUGCCGGCCCUACUUCUUUUAC ...........((((..(((....((((((((.((((...)))).)))))))).(((((((.......)))))))..((((((((.((......)).)))))))).))).))))...... ( -40.40) >DroSim_CAF1 9761 120 - 1 CACAUGCACAUGCAGGCAGGACAAGAGCAUUUGGCAUUUUAUGCGAAAUGUUUCCCCGGCGAAGGAGCCGUCGGGAUUCGGCAUUAUAGUUGUAUGAGAUGCCGGCCCUCCUUCUGUUAC ....(((....)))(((((((..((.((....((((((((((((((((((((((((((((......))))..))))...))))))....)))))))))))))).)).))..))))))).. ( -45.60) >consensus CACAUGCACAUG_AGGCAGGACAAGAGCAUUUGGCAUUUUAUGCGAAAUGUUUCCCCGGCGAAGGAGCCGUCGGGAUUCGGCAUUAUAGUUGUAUGAGAUGCCGGCCCUACUUCUGUUAC ..............(((((((..((.((....((((((((((((((((((((((((((((......))))..))))...))))))....)))))))))))))).)).))..))))))).. (-40.35 = -40.80 + 0.45)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:41:15 2006