Sequence ID | 3L_DroMel_CAF1 |
---|---|
Location | 2,197,348 – 2,197,476 |
Length | 128 |
Max. P | 0.969970 |
Location | 2,197,348 – 2,197,448 |
---|---|
Length | 100 |
Sequences | 5 |
Columns | 100 |
Reading direction | forward |
Mean pairwise identity | 82.54 |
Mean single sequence MFE | -38.88 |
Consensus MFE | -26.80 |
Energy contribution | -28.88 |
Covariance contribution | 2.08 |
Combinations/Pair | 1.12 |
Mean z-score | -2.43 |
Structure conservation index | 0.69 |
SVM decision value | 1.38 |
SVM RNA-class probability | 0.948420 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 2197348 100 + 23771897 GCAGGCAAACACGGCAGACGACGUCAUGCCGAUGUAUCCAAUGGAUCCUAUGGAAACGAUGGCUCCGAUGGAGCCGGCAUUCCAUGGGUGUCCUCUUCGA ...((...(((((((((((...))).))))).)))..))...(((((((((((((....(((((((...)))))))...))))))))).))))....... ( -42.70) >DroSec_CAF1 249353 100 + 1 GCAGGCAAACACGGCAGACGACGUCAUGCCGAUGUAUCCAGUGGAUCCUAUGGAUACGAUGGCUCCGAUGGAGCCAGCAUUCCAUGGGUGUCCUCUUCGG ...((...(((((((((((...))).))))).)))..))((.((((((((((((.....(((((((...)))))))....)))))))).)))).)).... ( -44.10) >DroSim_CAF1 249826 100 + 1 GCAGGCAAACACGGCAGACGACGUCAUGCCGAUGUAUCCAGUGGAUCCUAUGGAUACGAUGGCUCCGAUGGAGCCAGCAUUCCAUGGGUGUCCUCUUCGG ...((...(((((((((((...))).))))).)))..))((.((((((((((((.....(((((((...)))))))....)))))))).)))).)).... ( -44.10) >DroEre_CAF1 254696 91 + 1 GCAGGCAAACACGGCAGACGACGGCAUGCCAAU---------GGAUCCGAUGAAUCCGACGGCUCCGAUGGAGCCGUCAUUCCAUGAGUGUUCUGUUCGG .(..((((((((((((..(....)..)))).((---------(((((....))....(((((((((...)))))))))..)))))..))))).)))..). ( -35.60) >DroYak_CAF1 248334 82 + 1 GCAGGCAAACACGGCAGACGACGGCUUGCC------------------GAUGAAUCCGAUGGCUCCAAUGGAGCCGGCAUUCCAUGGGUGUUCCGUUCCG ...........(((.....(((((..((((------------------.((((((((...((((((...)))))))).))).))).))))..)))))))) ( -27.90) >consensus GCAGGCAAACACGGCAGACGACGUCAUGCCGAUGUAUCCA_UGGAUCCUAUGGAUACGAUGGCUCCGAUGGAGCCGGCAUUCCAUGGGUGUCCUCUUCGG ...((((...(((........)))..))))............((((((((((((.....(((((((...)))))))....)))))))).))))....... (-26.80 = -28.88 + 2.08)
Location | 2,197,348 – 2,197,448 |
---|---|
Length | 100 |
Sequences | 5 |
Columns | 100 |
Reading direction | reverse |
Mean pairwise identity | 82.54 |
Mean single sequence MFE | -36.58 |
Consensus MFE | -27.62 |
Energy contribution | -28.46 |
Covariance contribution | 0.84 |
Combinations/Pair | 1.13 |
Mean z-score | -2.10 |
Structure conservation index | 0.76 |
SVM decision value | 1.09 |
SVM RNA-class probability | 0.912931 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 2197348 100 - 23771897 UCGAAGAGGACACCCAUGGAAUGCCGGCUCCAUCGGAGCCAUCGUUUCCAUAGGAUCCAUUGGAUACAUCGGCAUGACGUCGUCUGCCGUGUUUGCCUGC .......(((..((.((((((((..((((((...))))))..)).)))))).)).)))...((..(((.(((((.(((...)))))))))))...))... ( -37.40) >DroSec_CAF1 249353 100 - 1 CCGAAGAGGACACCCAUGGAAUGCUGGCUCCAUCGGAGCCAUCGUAUCCAUAGGAUCCACUGGAUACAUCGGCAUGACGUCGUCUGCCGUGUUUGCCUGC ....((.(((..((.((((((((.(((((((...))))))).))).))))).)).))).))((..(((.(((((.(((...)))))))))))...))... ( -40.20) >DroSim_CAF1 249826 100 - 1 CCGAAGAGGACACCCAUGGAAUGCUGGCUCCAUCGGAGCCAUCGUAUCCAUAGGAUCCACUGGAUACAUCGGCAUGACGUCGUCUGCCGUGUUUGCCUGC ....((.(((..((.((((((((.(((((((...))))))).))).))))).)).))).))((..(((.(((((.(((...)))))))))))...))... ( -40.20) >DroEre_CAF1 254696 91 - 1 CCGAACAGAACACUCAUGGAAUGACGGCUCCAUCGGAGCCGUCGGAUUCAUCGGAUCC---------AUUGGCAUGCCGUCGUCUGCCGUGUUUGCCUGC .....(((..((..(((((.(((((((((((...)))((((..(((((.....)))))---------..))))..))))))))...)))))..)).))). ( -36.40) >DroYak_CAF1 248334 82 - 1 CGGAACGGAACACCCAUGGAAUGCCGGCUCCAUUGGAGCCAUCGGAUUCAUC------------------GGCAAGCCGUCGUCUGCCGUGUUUGCCUGC .((.((((...((..((((..((((((((((...))))))....((....))------------------))))..)))).))...)))).....))... ( -28.70) >consensus CCGAAGAGGACACCCAUGGAAUGCCGGCUCCAUCGGAGCCAUCGUAUCCAUAGGAUCCA_UGGAUACAUCGGCAUGACGUCGUCUGCCGUGUUUGCCUGC .......((((((((((((((((.(((((((...))))))).))).))))).))................((((.(((...)))))))))))))...... (-27.62 = -28.46 + 0.84)
Location | 2,197,384 – 2,197,476 |
---|---|
Length | 92 |
Sequences | 5 |
Columns | 92 |
Reading direction | forward |
Mean pairwise identity | 83.59 |
Mean single sequence MFE | -36.08 |
Consensus MFE | -26.30 |
Energy contribution | -28.82 |
Covariance contribution | 2.52 |
Combinations/Pair | 1.13 |
Mean z-score | -2.56 |
Structure conservation index | 0.73 |
SVM decision value | 1.65 |
SVM RNA-class probability | 0.969970 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 2197384 92 + 23771897 UCCAAUGGAUCCUAUGGAAACGAUGGCUCCGAUGGAGCCGGCAUUCCAUGGGUGUCCUCUUCGAAUGGCUGAAAGCGGAGAGUAUCUGCUGC ......(((((((((((((....(((((((...)))))))...))))))))).))))..((((......))))((((((.....)))))).. ( -37.00) >DroSec_CAF1 249389 92 + 1 UCCAGUGGAUCCUAUGGAUACGAUGGCUCCGAUGGAGCCAGCAUUCCAUGGGUGUCCUCUUCGGAUGGCUGAAAGCGGAGAGUAUCUGCUGC ..((((((((((((((((.....(((((((...)))))))....)))))))).))))((....))..))))..((((((.....)))))).. ( -43.00) >DroSim_CAF1 249862 92 + 1 UCCAGUGGAUCCUAUGGAUACGAUGGCUCCGAUGGAGCCAGCAUUCCAUGGGUGUCCUCUUCGGAUGGCUGAAAGCGGAGAGUAUCUGCUGC ..((((((((((((((((.....(((((((...)))))))....)))))))).))))((....))..))))..((((((.....)))))).. ( -43.00) >DroEre_CAF1 254729 86 + 1 ------GGAUCCGAUGAAUCCGACGGCUCCGAUGGAGCCGUCAUUCCAUGAGUGUUCUGUUCGGAUGGCUAAGAGCGGAGAGUAGAUGCUGC ------((((.......))))(((((((((...)))))))))....(((.....((((((((..........)))))))).....))).... ( -29.40) >DroYak_CAF1 248364 80 + 1 ------------GAUGAAUCCGAUGGCUCCAAUGGAGCCGGCAUUCCAUGGGUGUUCCGUUCCGAUGGCUGAAAGCGGAGAGCAUCUGCUGC ------------((((..((((.(((((((...))))))).....((((.((.........)).)))).......))))...))))...... ( -28.00) >consensus UCCA_UGGAUCCUAUGGAUACGAUGGCUCCGAUGGAGCCGGCAUUCCAUGGGUGUCCUCUUCGGAUGGCUGAAAGCGGAGAGUAUCUGCUGC ......((((((((((((.....(((((((...)))))))....)))))))).))))..(((((....)))))((((((.....)))))).. (-26.30 = -28.82 + 2.52)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:49:29 2006