Locus 7218

Sequence ID 3L_DroMel_CAF1
Location 19,358,736 – 19,358,856
Length 120
Max. P 0.662043
window11728

overview

Window 8

Location 19,358,736 – 19,358,856
Length 120
Sequences 4
Columns 120
Reading direction forward
Mean pairwise identity 95.42
Mean single sequence MFE -42.77
Consensus MFE -37.10
Energy contribution -38.10
Covariance contribution 1.00
Combinations/Pair 1.00
Mean z-score -1.74
Structure conservation index 0.87
SVM decision value 0.27
SVM RNA-class probability 0.662043
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 19358736 120 + 23771897
CGCUCUAAUGAGUCUCGUUUCUCCUCUCGUUUGCGCUCCAGCUUCGUCUGUGGCAAUUGCAACGUGAUUUGGCCAACGCGGCUCCAUCGAGUUUCGCAAAUCGAGGGGGGUUUGAGAAGU
..(((....)))(((((...((((((((((((((((..(((......)))..))....(.(((.((((..((((.....))))..)))).))).)))))).)))))))))..)))))... ( -45.40)
>DroSec_CAF1 8566 120 + 1
CGCUCUAAUGAGUCUCGUUUCUCCUCUCGUUUGCGCUCCAGCUUCGUCUGUGGCAAUUGCAACGUGAUUUGGCCAACGCGGCUCCAUCGAGUUUCGCAAUUCGAGGGGGGUUUGAGAAGU
..(((....)))(((((...(((((((((.((((((..(((......)))..))....(.(((.((((..((((.....))))..)))).))).)))))..)))))))))..)))))... ( -44.10)
>DroSim_CAF1 8815 120 + 1
CGCUCUAAUGAGUCUCGUUUCUCCUCUCGUUUGCGCUCCAGCUUCGUCUGUGGCAAUUGCAACGUGAUUUGGCCAACGCGGCUCCAUCGAGUUUCGCAAUUCGAGGGGGGUUUGAAAAGU
.((((....)))).(((...(((((((((.((((((..(((......)))..))....(.(((.((((..((((.....))))..)))).))).)))))..)))))))))..)))..... ( -41.10)
>DroYak_CAF1 12675 120 + 1
CGCUCUAAUGAGUCUCGUUUCUCCUCUCGUUUGCGCUCCAGCUCCGUCUGUGGCAAUUGCAACGUGAUUUGGCCAUCGCGACUCUAUUGAGCUUGGCUAUUCGAGGGGGGUUAGAGAAGU
..(((....)))((((....(((((((((..((.(((..(((((.(((((((((.((..(...)..))...)))).)).)))......))))).)))))..)))))))))...))))... ( -40.50)
>consensus
CGCUCUAAUGAGUCUCGUUUCUCCUCUCGUUUGCGCUCCAGCUUCGUCUGUGGCAAUUGCAACGUGAUUUGGCCAACGCGGCUCCAUCGAGUUUCGCAAUUCGAGGGGGGUUUGAGAAGU
.((((....))))((((...(((((((((.((((((....(((..((((((.((....)).))).)))..)))....))(((((....)))))..))))..)))))))))..)))).... (-37.10 = -38.10 +   1.00)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:41:13 2006