Locus 7217

Sequence ID 3L_DroMel_CAF1
Location 19,358,003 – 19,358,123
Length 120
Max. P 0.751518
window11727

overview

Window 7

Location 19,358,003 – 19,358,123
Length 120
Sequences 4
Columns 120
Reading direction forward
Mean pairwise identity 87.96
Mean single sequence MFE -52.05
Consensus MFE -36.19
Energy contribution -37.50
Covariance contribution 1.31
Combinations/Pair 1.03
Mean z-score -2.07
Structure conservation index 0.70
SVM decision value 0.48
SVM RNA-class probability 0.751518
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 19358003 120 + 23771897
CAAAGGCAGCAUCCACCACGCGACUGUGCCAAUGACAGAGGCGUAAGCCCGAGGGGCGUGGCGCGCUGCGAGGGUGACCGAAGAGCAUGGGUAACGGGGAGGUGCCACCGGCAAAACGGC
....((((.(.(((.((..(((.(..((((.......(.(((....))))....))))..))))(((.(..((....))...)))).........)))))).)))).(((......))). ( -50.10)
>DroSec_CAF1 7856 118 + 1
CAAAGGCAGCAUCCACCACGCGACUGUGCCAAUGACAGAGGCGUAAGGCCGAGGGGCGUGGC--GCCGCGUGGGUGACCGUUGAGCAGGGGGGUGGGGGUGGUGCCACCGGCAAAACGGC
....((((.(((((.((((.(..((((..((((....(.(((((.(.(((....))).).))--))).)..((....)))))).))))..).))))))))).)))).(((......))). ( -59.30)
>DroSim_CAF1 8096 118 + 1
CAAAGGCAGCAUCCACCACGCGACUGUGCCAAUGACAGAGGCGUAAGGCCGAGGGGCGUGGC--GCCGCGUGGGUGACCGUUGAGCAGGGGGGAGGGGGUGGUGCCACCGGCAAAACGGC
....((((.(((((.((.(.(..((((..((((....(.(((((.(.(((....))).).))--))).)..((....)))))).))))..).).))))))).)))).(((......))). ( -54.60)
>DroYak_CAF1 11991 108 + 1
CAAAGGCAGCAUCC---ACGCGACUGUGGCAAUGACAGAGGCGUAAGGCCGAGGGGCGUGGC--GCCGCGUGGGUAGGUAAAGAGCAG-------GGGGAGGUGCCACCGGCAAAACGGC
....((((.(((((---((((..((((.......)))).(((((.(.(((....))).).))--)))))))))))..((.....))..-------.....).)))).(((......))). ( -44.20)
>consensus
CAAAGGCAGCAUCCACCACGCGACUGUGCCAAUGACAGAGGCGUAAGGCCGAGGGGCGUGGC__GCCGCGUGGGUGACCGAAGAGCAGGGGGGAGGGGGAGGUGCCACCGGCAAAACGGC
....((((.(((((.((((((..((((.......)))).(((((.(.(((....))).).))..)))))))))((.........))..........))))).)))).(((......))). (-36.19 = -37.50 +   1.31)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:41:12 2006