Sequence ID | 3L_DroMel_CAF1 |
---|---|
Location | 19,353,540 – 19,353,651 |
Length | 111 |
Max. P | 0.998133 |
Location | 19,353,540 – 19,353,651 |
---|---|
Length | 111 |
Sequences | 4 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 73.28 |
Mean single sequence MFE | -31.48 |
Consensus MFE | -21.16 |
Energy contribution | -20.98 |
Covariance contribution | -0.19 |
Combinations/Pair | 1.17 |
Mean z-score | -2.34 |
Structure conservation index | 0.67 |
SVM decision value | 3.01 |
SVM RNA-class probability | 0.998133 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 19353540 111 - 23771897 ---------GGAAUUUUGAGAGUCCGUUGAAAUUGGAGGCGGAGUUUUGGAUACCUCCGAAUUCGUCAUGCAACACAAUGGCCAUACGGCAUCCGAGAGCUUUAUAAUUCCCAUCUUCAC ---------((((((...((((..(((((....((((..(((((..........)))))..)))).....))))......(((....)))......)..))))..))))))......... ( -29.90) >DroSec_CAF1 3693 88 - 1 --------------------------------UUGUAGGCGGAGUUUUGGAUGUCUCCAAAUUCGCCAUGCAACACAAUGGCCAUACAGCAUCCGAGAGCUGUAUAAUUCCCAUCUUCAC --------------------------------(((((((((((..((((((....)))))))))))).)))))....((((..(((((((........))))))).....))))...... ( -27.30) >DroSim_CAF1 3734 88 - 1 --------------------------------UUGUAGGCGGAGUUUUGGAUGUCUCCAAAUUCGCCAUGCAACACAAUGGCCAUACAGCAUCCGAGAGCUGUAUAAUUCCCAUCUUCAC --------------------------------(((((((((((..((((((....)))))))))))).)))))....((((..(((((((........))))))).....))))...... ( -27.30) >DroYak_CAF1 7377 120 - 1 GAAUUCGUUGGAAUUUGGAGAUUCCGAUAAACUCGGAGGCGGAGUUUUGGAAGGCUCCGAAUUCGCCAUGCAACACAAAGGCCAUACUGCUUCCGAGGGCUUUAUAAGCCCCUUCUUCAU (((...(((((((((....)))))))))...((((((((((((((((....)))))))......(((............)))......)))))))))((((.....)))).....))).. ( -41.40) >consensus ________________________________UUGGAGGCGGAGUUUUGGAUGUCUCCAAAUUCGCCAUGCAACACAAUGGCCAUACAGCAUCCGAGAGCUGUAUAAUUCCCAUCUUCAC .....................................((((((..((((((....))))))))))))..........((((..(((((((........))))))).....))))...... (-21.16 = -20.98 + -0.19)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:40:58 2006