Locus 721

Sequence ID 3L_DroMel_CAF1
Location 2,196,615 – 2,196,717
Length 102
Max. P 0.911681
window1106

overview

Window 6

Location 2,196,615 – 2,196,717
Length 102
Sequences 6
Columns 119
Reading direction forward
Mean pairwise identity 80.00
Mean single sequence MFE -27.97
Consensus MFE -21.27
Energy contribution -21.05
Covariance contribution -0.22
Combinations/Pair 1.24
Mean z-score -1.99
Structure conservation index 0.76
SVM decision value 1.08
SVM RNA-class probability 0.911681
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 2196615 102 + 23771897
--------CUCU-CUUUGAACAAUUUGAAACACUUGGGCAUACAAU-AUGUUGAAAUGAUAAUGAGGCGAAAUUGUUUUUUGACUCG-CUC-CCAGGUGUUUCUGU-UUCU----CUUU
--------....-....(((((....((((((((((((....(((.-...)))..........(((.(((((.....))))).))).-..)-))))))))))))))-))..----.... ( -25.60)
>DroPse_CAF1 293399 105 + 1
-------CCGCU-CUUGGAACAAUUUGAAACACUUGGGCAUACAAU-AUGUUGAAAUGAUAAUGAGCGAAAAUUGUUUUUUGACUCCGUUCCCCAGGUGUUUUUGG-GGGG----CGGG
-------(((((-(((.(((........((((((((((...((...-..((..(((.((((((........)))))))))..))...))..))))))))))))).)-))))----))). ( -34.80)
>DroWil_CAF1 313351 105 + 1
-------CGGCU-CUUUGAACAAUUUGAAACACUUGGGCAUACAAU-AUGUUGAAAUGAUAAUGAGCGAAAAUUGUUUUUUGACUUG-CUCCCCAGGUGUUUUUUUUUUCU----UUUU
-------.....-....(((.((...((((((((((((....(((.-..((..(((.((((((........)))))))))..)))))-...)))))))))))).)).))).----.... ( -23.80)
>DroMoj_CAF1 257910 115 + 1
CACUGUCUAGCUCUUUUGAACAAUCUGAAACACUUGGGCAUACAGC-AUGCUGAAAUGAUAAUGAGCGAAAAUUGUUUUUUGACUCG-CUCCCCAGGUGUUUU-GU-UUGCAACACAAA
...(((...((((....)).......((((((((((((....(((.-...)))..........((((((.....(((....))))))-)))))))))))))))-..-..))...))).. ( -29.00)
>DroAna_CAF1 241583 94 + 1
-----------G-CUUUGAACAAUUUGAAGCACUUGGGCAUACAAUAAUGUUGAAAUGAUAAUGAGGCGAAAUUGUUUUUUGACUCG-CUCCCCAGGUGUUUU-----CCU----C---
-----------.-.............((((((((((((....((((...))))..........(((.(((((.....))))).))).-...))))))))))))-----...----.--- ( -22.50)
>DroPer_CAF1 271740 104 + 1
--------CGCU-CUUGGAACAAUUUGAAACACUUGGGCAUACAAU-AUGUUGAAAUGAUAAUGAGCGAAAAUUGUUUUUUGACUCCGUUCCCCAGGUGUUUUUGG-GGGG----CGGG
--------((((-((..((....))..)..((.((.((((((...)-))))).)).)).....))))).................((((((((((((....)))))-))))----))). ( -32.10)
>consensus
________CGCU_CUUUGAACAAUUUGAAACACUUGGGCAUACAAU_AUGUUGAAAUGAUAAUGAGCGAAAAUUGUUUUUUGACUCG_CUCCCCAGGUGUUUUUGU_UUCU____CGGG
..........................((((((((((((....((((...))))..........(((((((((....)))))).))).....))))))))))))................ (-21.27 = -21.05 +  -0.22)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:49:26 2006