Sequence ID | 3L_DroMel_CAF1 |
---|---|
Location | 19,351,007 – 19,351,127 |
Length | 120 |
Max. P | 0.775084 |
Location | 19,351,007 – 19,351,127 |
---|---|
Length | 120 |
Sequences | 4 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 91.25 |
Mean single sequence MFE | -39.48 |
Consensus MFE | -31.79 |
Energy contribution | -33.10 |
Covariance contribution | 1.31 |
Combinations/Pair | 1.03 |
Mean z-score | -1.84 |
Structure conservation index | 0.81 |
SVM decision value | 0.54 |
SVM RNA-class probability | 0.775084 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 19351007 120 - 23771897 CAAACAUUGCUCCGGUGAGUGAAUGCCGCCAGCUGUCGUCCGCUUCUCCGACGAGUCGAGUGGACAACAGUACAGUAAACAAUCGAAAGAGUGAACUUAUGAAAGAAUGUUUGCACUAGC (((((((((((..((((.((....)))))).(((((.(((((((((((....)))..)))))))).)))))..)))...((.((....)).))............))))))))....... ( -37.20) >DroSec_CAF1 1173 120 - 1 CAAACAUUGCUCCGGUGAGUAAAUGCCGCCAGCUGUCGUCCGCUUCUCCGACGAGAGGAGUGGCCAACAGUACAGUAAGCAAUCGAAGGAGUGAACUUAUGAAACAAUGUUUGCACUAGG (((((((((....((((.((....)))))).(((((.(.(((((((((......))))))))).).)))))...(((((((.((....)).))..)))))....)))))))))....... ( -39.50) >DroSim_CAF1 1199 120 - 1 CAAACAUUGCUCCGGUGAGUGAAUGCCGCCAGCUGUCGUCCGCUUCUCCGACGCGAGGAGUGGCCAACAGUACAGUAAACAAUCGAAGGAGUGAACUUAUGAAACAAUGUUUGCACUAGG (((((((((((((((((.((....)))))).(((((.(.(((((((((......))))))))).).)))))................))))....(....)...)))))))))....... ( -39.20) >DroYak_CAF1 4415 119 - 1 CAAACAUUGCUCCGGUGAGUGAAUGCUGCCAGCUGUCG-CCGCCUCUCUGUCGGGAGGAGUGGCGAAGAGUACAGUAAACAAUCGAGGGAGUGAACUUAUGAAACAAUGUUUGCGCUGAC (((((((((((((..(((.((..(((((...(((.(((-((((..((((....))))..)))))))..))).)))))..)).)))..))))....(....)...)))))))))....... ( -42.00) >consensus CAAACAUUGCUCCGGUGAGUGAAUGCCGCCAGCUGUCGUCCGCUUCUCCGACGAGAGGAGUGGCCAACAGUACAGUAAACAAUCGAAGGAGUGAACUUAUGAAACAAUGUUUGCACUAGC (((((((((((((((((.((....)))))).(((((.(.(((((((((......))))))))).).)))))................)))))...(....)....))))))))....... (-31.79 = -33.10 + 1.31)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:40:50 2006