| Sequence ID | 3L_DroMel_CAF1 |
|---|---|
| Location | 19,350,372 – 19,350,466 |
| Length | 94 |
| Max. P | 0.586495 |
| Location | 19,350,372 – 19,350,466 |
|---|---|
| Length | 94 |
| Sequences | 3 |
| Columns | 109 |
| Reading direction | reverse |
| Mean pairwise identity | 68.01 |
| Mean single sequence MFE | -21.90 |
| Consensus MFE | -9.40 |
| Energy contribution | -9.53 |
| Covariance contribution | 0.12 |
| Combinations/Pair | 1.31 |
| Mean z-score | -2.29 |
| Structure conservation index | 0.43 |
| SVM decision value | 0.11 |
| SVM RNA-class probability | 0.586495 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 19350372 94 - 23771897 CUAUAUUUAAGUUUCUGGACAAUAUAUACGCGCUUACCGCGGAAAUCUUUUUCAUAACCAGAA-------AUGGUGAAAAAGG--------UACAAAACGUGAAUGGAA ...((((((.((((.((...........((((.....))))...(((((((((...((((...-------.))))))))))))--------).)))))).))))))... ( -23.20) >DroSec_CAF1 551 104 - 1 CUGCAUUCAAGUUUCAUAACAGUAUAUGUGCAUAUAC-----AAAUCAAUCAAAGUGAUUGAACUGCAUUAUUAUGAUGAAUGUAACCUAUUAGAAAAUGUGAAUGGAA .((((((((....((((((..((((((....))))))-----...((((((.....)))))).........))))))))))))))..(((((..........))))).. ( -22.20) >DroSim_CAF1 570 104 - 1 CUGCAUUAAUGUUUCAUAACAGUAUAUGUGCAUUUAC-----AAAUCAAUCAAAUUGAUUGAACUGCAUUAUUAUGAUGAAUGUAACCUAUUAGAAAAUGUGAAUGGAA ..((((...((((....))))....)))).(((((((-----(..((((((.....))))))..((((((.........)))))).............))))))))... ( -20.30) >consensus CUGCAUUAAAGUUUCAUAACAGUAUAUGUGCAUUUAC_____AAAUCAAUCAAAUUGAUUGAACUGCAUUAUUAUGAUGAAUGUAACCUAUUAGAAAAUGUGAAUGGAA ...((((((..((((.......(((((...((((...........(((((((...)))))))..........))))....)))))........))))...))))))... ( -9.40 = -9.53 + 0.12)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:40:49 2006