Locus 7206

Sequence ID 3L_DroMel_CAF1
Location 19,350,190 – 19,350,305
Length 115
Max. P 0.781138
window11702

overview

Window 2

Location 19,350,190 – 19,350,305
Length 115
Sequences 4
Columns 120
Reading direction forward
Mean pairwise identity 80.28
Mean single sequence MFE -26.52
Consensus MFE -16.69
Energy contribution -17.75
Covariance contribution 1.06
Combinations/Pair 1.21
Mean z-score -1.97
Structure conservation index 0.63
SVM decision value 0.56
SVM RNA-class probability 0.781138
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 19350190 115 + 23771897
CGAGCUGGACAAACACUCCGCUCUGAUUUCACAGCACCAGUGAUGCGAAGGUACCACUUCUUCCUUCUGAACUUAAGUGCCCAACUUCGACUACCUCCGUAAGCCAUUACU-----GCGA
.((((.(((.......))))))).............((((((((((((((....(((((.(((.....)))...))))).....)))))........(....).)))))))-----).). ( -25.40)
>DroSec_CAF1 382 115 + 1
CGAGCUGGACAAACACUCCACUCUGAUUCCACAGCACCAGUGAUGCGAAGGUACCAAUAUUACCUUCUGCAUUUAGGUGCUCAACACUGACUUUCUUUACAAGGCAUUACU-----GCAA
.(((.((((.......)))))))((((.((...(((((...((((((((((((.......))))))).)))))..)))))(((....)))............)).))))..-----.... ( -32.10)
>DroSim_CAF1 401 115 + 1
CGAGCUGGACAAACACUCCACUCUGAUUCCACAGCACCAGUGAUGCGAAGGUACCACUAUUACCUUCUGCAUUUAGGUGCUCAACACUGACUUUCUUUACAAGGCAUUACU-----GCAA
.(((.((((.......)))))))((((.((...(((((...((((((((((((.......))))))).)))))..)))))(((....)))............)).))))..-----.... ( -32.10)
>DroYak_CAF1 3616 120 + 1
CGAACUGGACAAACACUUUACUCUUAUUCCACACCAUCAGUGAUGCGAAGGUACCAUCUCUUCCUUUUUAACUUAGGUGCACACGAAUUUCUUUCUUUAUAGUCCAUUAUUUUCAAGCAA
.....(((((.....................((((...(((.....(((((...........)))))...)))..)))).....(((.....)))......))))).............. ( -16.50)
>consensus
CGAGCUGGACAAACACUCCACUCUGAUUCCACAGCACCAGUGAUGCGAAGGUACCACUACUACCUUCUGAACUUAGGUGCUCAACACUGACUUUCUUUACAAGCCAUUACU_____GCAA
.(((.((((.......)))))))..........((...(((((((((((((((.......))))))).((((....)))).......................)))))))).....)).. (-16.69 = -17.75 +   1.06)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:40:48 2006