Locus 7205

Sequence ID 3L_DroMel_CAF1
Location 19,345,023 – 19,345,123
Length 100
Max. P 0.700596
window11701

overview

Window 1

Location 19,345,023 – 19,345,123
Length 100
Sequences 5
Columns 111
Reading direction reverse
Mean pairwise identity 81.79
Mean single sequence MFE -34.10
Consensus MFE -19.90
Energy contribution -21.26
Covariance contribution 1.36
Combinations/Pair 1.16
Mean z-score -2.05
Structure conservation index 0.58
SVM decision value 0.35
SVM RNA-class probability 0.700596
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 19345023 100 - 23771897
UAAACAAGCGUGGGGCGUGCGCUGACAUUUUGCGGUGCUCG---UCCCCAAAAAA--------CUGAAAAACGGAACUGGACUAAGGGAUAUGGAAUAGCCAUCCAGUGCA
.......(((.((((((.((((((.(.....))))))).))---)))))......--------(((.....))).((((((..........(((.....))))))))))). ( -31.80)
>DroSec_CAF1 178627 98 - 1
UAAACAAGCGUGGGGCGUGCGCUGACAUUUUGCGGUGCUCG---UCCCCAA-AAA--------CUGAAAAACGAAGCUGGACUAAG-GAUAUGGAAUAGCCAUCCAGUGCA
.......(((.((((((.((((((.(.....))))))).))---)))))..-...--------............((((((.....-....(((.....))))))))))). ( -32.00)
>DroSim_CAF1 195235 99 - 1
UAAACAAGCGUGGGGCGUGCGCUGACAUUUUGCGGUGCUCG---UCCCCAA-AAA--------CUGAAAAACGGAGCUGGACUAAGGGAUAUGGAAUAGCCAUCCAGUGCA
.......(((.((((((.((((((.(.....))))))).))---)))))..-...--------(((.....))).((((((..........(((.....))))))))))). ( -32.10)
>DroEre_CAF1 178298 98 - 1
UAAACAAGCGUGGGGCGUGCGCUGACAUUUUGCGGCGGUCG---UCC-CAA-AAA--------CUGAAAAACGGCGCUGGACCAAGGGAUAUGGAAUAGCCAUCCAGUGCA
..........(((((((..(((((.(.....))))))..))---)))-)).-...--------..........((((((((((...))...(((.....))))))))))). ( -34.90)
>DroAna_CAF1 158829 101 - 1
UUAACAAGCGUGGGGCGUGCACUGACAUUCUGUGGUGCUGAGGCUCCCGAA-AAAAGGGGGCGCUGCAAAAUU--GC-------AGGACUAUGGGCCUGCGAUGCCGUGCA
.......(((((((((..(((((.((.....)))))))....((((((...-....))))))))).....(((--((-------(((.(.....))))))))).)))))). ( -39.70)
>consensus
UAAACAAGCGUGGGGCGUGCGCUGACAUUUUGCGGUGCUCG___UCCCCAA_AAA________CUGAAAAACGGAGCUGGACUAAGGGAUAUGGAAUAGCCAUCCAGUGCA
.......((.(((((((.((((((.(.....))))))).))....))))).........................((((((..........(((.....))))))))))). (-19.90 = -21.26 +   1.36)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:40:47 2006