Locus 7203

Sequence ID 3L_DroMel_CAF1
Location 19,331,903 – 19,332,004
Length 101
Max. P 0.780431
window11699

overview

Window 9

Location 19,331,903 – 19,332,004
Length 101
Sequences 4
Columns 107
Reading direction forward
Mean pairwise identity 88.14
Mean single sequence MFE -33.45
Consensus MFE -24.62
Energy contribution -24.62
Covariance contribution 0.00
Combinations/Pair 1.11
Mean z-score -1.94
Structure conservation index 0.74
SVM decision value 0.56
SVM RNA-class probability 0.780431
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 19331903 101 + 23771897
UUCAGCUGGGGCAUGUCCUGGUUGCUUGGGAAUGUCCUUUUCGCCAGCGCUUGUGUGUGU------UGGUGUACUCGGGAAAAUGUCUGGAUGUGUUCCAAAUUUAC
..((((..(((....)))..)))).((((((((((((....(((((((((......))))------)))))......(((.....))))))))).))))))...... ( -35.40)
>DroSec_CAF1 165752 101 + 1
UUCAGCUGGGGCAUGUCCUGGUUGCUUGGGAAUGUCCUUUUCGCCAGCGCUUGUGUGUGU------UGGUGUACUCGGGGAAAUGUCUGGAUGUUUUCCAAAUUUAC
..((((..(((....)))..)))).((((((((((((....(((((((((......))))------))))).......(((....)))))))).)))))))...... ( -35.40)
>DroSim_CAF1 182296 101 + 1
UUCAGUUGGGGCAUGUCCUGGUUGCUUGGGAAUGUCCUUUUCGCCAGCGCUUGUGUGUGU------UGGUGUACUCGGGAAAAUGUCUGGAUGUUUUCCAAAUUUAC
.......(((((((.(((..(....)..))))))))))...(((((((((......))))------)))))......(((((((((....)))))))))........ ( -35.20)
>DroYak_CAF1 188418 99 + 1
--------GGGCGUGUCCUGGUUGCUGGGGAAUGUCCUUUUCGCCUGGGCUUAUGGGUGUAUGUAGGGGUGUACUCGCGAAAAUGUCUGGAUGUUUUCCAAAUUUAC
--------((((((..((..(...)..))..))))))(((((((.((.(((....))).))....(((.....))))))))))....((((.....))))....... ( -27.80)
>consensus
UUCAGCUGGGGCAUGUCCUGGUUGCUUGGGAAUGUCCUUUUCGCCAGCGCUUGUGUGUGU______UGGUGUACUCGGGAAAAUGUCUGGAUGUUUUCCAAAUUUAC
........((((((.(((..(....)..)))))))))....(((((((((......))))......)))))......(((((((((....)))))))))........ (-24.62 = -24.62 +   0.00)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:40:45 2006